The global increase in the construction of reservoirs has drawn attention given its documented hydrological and biogeochemical impacts on downstream rivers; however, the impact of reservoirs on downstream pCO2 (partial pressure of carbon dioxide) is still poorly understood. To evaluate these impacts, the interactions between reservoirs and their corresponding upstream and downstream rivers were analyzed for three reservoirs in the Seine Basin based on monthly measurement during two hydrological years. The seasonal variations of water quality in the reservoirs were mainly driven by the entering water and the biogeochemical processes occurring in the reservoirs. Our results unravel the crucial role of reservoir in downstream water quality, which significantly increased DOC (dissolved organic carbon) and BDOC (biodegradable DOC) concentrations, while lowered DSi (dissolved silica) concentrations during emptying period (p < 0.01). Furthermore, the impacts of reservoirs on the annual fluxes of DOC, BDOC, and DSi were quantified and suggested that the three reservoirs respectively increased 20% and 23% of annual fluxes of DOC and BDOC, while decreased 33% of annual DSi fluxes in their downstream rivers. Additionally, the reservoirs significantly decreased downstream riverine pCO2 (p < 0.01), and enhanced the gas transfer coefficient of CO2 in downstream rivers by 1.3 times during the emptying period, which highlights the necessity to consider the potential impact of reservoirs on riverine CO2 emissions. Overall, our results highlight the importance of combining biogeochemical and hydrological characteristics to understand the impacts of reservoirs on downstream rivers, and emphasize the need of similar studies under the current context of increasing reservoir constructions.