Receptive field estimation in large visual neuron assemblies using a super-resolution approach. 2022

Daniela Pamplona, and Gerrit Hilgen, and Matthias H Hennig, and Bruno Cessac, and Evelyne Sernagor, and Pierre Kornprobst
U2IS, École Nationale Supérieure de Techniques Avancées, Institut Polytechnique de Paris, Palaiseau, France.

Computing the spike-triggered average (STA) is a simple method to estimate linear receptive fields (RFs) in sensory neurons. For random, uncorrelated stimuli, the STA provides an unbiased RF estimate, but in practice, white noise at high resolution is not an optimal stimulus choice as it usually evokes only weak responses. Therefore, for a visual stimulus, images of randomly modulated blocks of pixels are often used. This solution naturally limits the resolution at which an RF can be measured. Here, we present a simple super-resolution technique that can overcome these limitations. We define a novel stimulus type, the shifted white noise (SWN), by introducing random spatial shifts in the usual stimulus to increase the resolution of the measurements. In simulated data, we show that the average error using the SWN was 1.7 times smaller than when using the classical stimulus, with successful mapping of 2.3 times more neurons, covering a broader range of RF sizes. Moreover, successful RF mapping was achieved with brief recordings of light responses, lasting only about 1 min of activity, which is more than 10 times more efficient than the classical white noise stimulus. In recordings from mouse retinal ganglion cells with large scale multielectrode arrays, we successfully mapped 21 times more RFs than when using the traditional white noise stimuli. In summary, randomly shifting the usual white noise stimulus significantly improves RFs estimation, and requires only short recordings.NEW & NOTEWORTHY We present a novel approach to measure receptive fields in large and heterogeneous populations of sensory neurons recorded with large-scale, high-density multielectrode arrays. Our approach leverages super-resolution principles to improve the yield of the spike-triggered average method. By simply designing a new stimulus, we provide experimentalists with a new and fast technique to simultaneously detect more receptive fields at higher resolution in population of hundreds to thousands of neurons.

UI MeSH Term Description Entries
D010775 Photic Stimulation Investigative technique commonly used during ELECTROENCEPHALOGRAPHY in which a series of bright light flashes or visual patterns are used to elicit brain activity. Stimulation, Photic,Visual Stimulation,Photic Stimulations,Stimulation, Visual,Stimulations, Photic,Stimulations, Visual,Visual Stimulations
D000818 Animals Unicellular or multicellular, heterotrophic organisms, that have sensation and the power of voluntary movement. Under the older five kingdom paradigm, Animalia was one of the kingdoms. Under the modern three domain model, Animalia represents one of the many groups in the domain EUKARYOTA. Animal,Metazoa,Animalia
D012165 Retinal Ganglion Cells Neurons of the innermost layer of the retina, the internal plexiform layer. They are of variable sizes and shapes, and their axons project via the OPTIC NERVE to the brain. A small subset of these cells act as photoreceptors with projections to the SUPRACHIASMATIC NUCLEUS, the center for regulating CIRCADIAN RHYTHM. Cell, Retinal Ganglion,Cells, Retinal Ganglion,Ganglion Cell, Retinal,Ganglion Cells, Retinal,Retinal Ganglion Cell
D051379 Mice The common name for the genus Mus. Mice, House,Mus,Mus musculus,Mice, Laboratory,Mouse,Mouse, House,Mouse, Laboratory,Mouse, Swiss,Mus domesticus,Mus musculus domesticus,Swiss Mice,House Mice,House Mouse,Laboratory Mice,Laboratory Mouse,Mice, Swiss,Swiss Mouse,domesticus, Mus musculus

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