Kinetics of Aspartimide Formation and Hydrolysis in Lasso Peptide Lihuanodin. 2023

Li Cao, and Hader E Elashal, and A James Link
Department of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey 08544, United States.

Aspartimides are notorious as undesired side products in solid-phase peptide synthesis and in pharmaceutical formulations. However, we have discovered several ribosomally synthesized and post-translationally modified peptides (RiPPs) in which aspartimide is installed intentionally via enzymatic activity of protein l-isoaspartyl methyltransferase (PIMT) homologues. In the case of the lasso peptide lihuanodin, the methyltransferase LihM recognizes the lassoed substrate pre-lihuanodin, specifically methylating the side chain of an l-Asp residue in the ring portion of the lasso peptide. The subsequent nucleophilic attack from the adjacent amide leads to the formation of an aspartimide. The resulting aspartimide hydrolyzes regioselectively to l-Asp in buffers above pH 7. Here we report the first Michaelis-Menten kinetic measurements of such a RiPP-associated PIMT homologue, LihM, acting on its cognate substrate pre-lihuanodin. Additionally, we measured the rate of aspartimide hydrolysis, which allowed us to deduce the kinetics of the entire reaction network. The relative magnitudes of these rates explain the accumulation and relative stability of aspartimide-containing lihuanodin. We also demonstrate that the residue C-terminal to the aspartimide controls the regioselectivity of hydrolysis and thus the threadedness of the peptide.

UI MeSH Term Description Entries
D007700 Kinetics The rate dynamics in chemical or physical systems.
D010455 Peptides Members of the class of compounds composed of AMINO ACIDS joined together by peptide bonds between adjacent amino acids into linear, branched or cyclical structures. OLIGOPEPTIDES are composed of approximately 2-12 amino acids. Polypeptides are composed of approximately 13 or more amino acids. PROTEINS are considered to be larger versions of peptides that can form into complex structures such as ENZYMES and RECEPTORS. Peptide,Polypeptide,Polypeptides
D006868 Hydrolysis The process of cleaving a chemical compound by the addition of a molecule of water.
D001224 Aspartic Acid One of the non-essential amino acids commonly occurring in the L-form. It is found in animals and plants, especially in sugar cane and sugar beets. It may be a neurotransmitter. (+-)-Aspartic Acid,(R,S)-Aspartic Acid,Ammonium Aspartate,Aspartate,Aspartate Magnesium Hydrochloride,Aspartic Acid, Ammonium Salt,Aspartic Acid, Calcium Salt,Aspartic Acid, Dipotassium Salt,Aspartic Acid, Disodium Salt,Aspartic Acid, Hydrobromide,Aspartic Acid, Hydrochloride,Aspartic Acid, Magnesium (1:1) Salt, Hydrochloride, Trihydrate,Aspartic Acid, Magnesium (2:1) Salt,Aspartic Acid, Magnesium-Potassium (2:1:2) Salt,Aspartic Acid, Monopotassium Salt,Aspartic Acid, Monosodium Salt,Aspartic Acid, Potassium Salt,Aspartic Acid, Sodium Salt,Calcium Aspartate,Dipotassium Aspartate,Disodium Aspartate,L-Aspartate,L-Aspartic Acid,Magnesiocard,Magnesium Aspartate,Mg-5-Longoral,Monopotassium Aspartate,Monosodium Aspartate,Potassium Aspartate,Sodium Aspartate,Aspartate, Ammonium,Aspartate, Calcium,Aspartate, Dipotassium,Aspartate, Disodium,Aspartate, Magnesium,Aspartate, Monopotassium,Aspartate, Monosodium,Aspartate, Potassium,Aspartate, Sodium,L Aspartate,L Aspartic Acid
D026601 Protein D-Aspartate-L-Isoaspartate Methyltransferase A PROTEIN O-METHYLTRANSFERASE that recognizes and catalyzes the methyl esterification of ISOASPARTIC ACID and D-ASPARTIC ACID residues in peptides and proteins. It initiates the repair of proteins damaged by the spontaneous decomposition of normal L-aspartic acid and L-asparagine residues. Protein-D-Aspartate Methyltransferase,Protein-L-Isoaspartate-D-Aspartate-O-Methyltransferase,D-Aspartyl-L-Isoaspartyl Methyltransferase,Isoaspartyl-Aspartyl Protein Methyltransferase,L-Isoaspartyl Protein Carboxymethyltransferase,Methyltransferase PIMT,PCMT1 Gene Product,Protein L-Isoaspartate O-Methyltransferase,Protein L-Isoaspartyl Methyltransferase,Protein-D-Asp Methyltransferase,Protein-L-Isoaspartate Methyltransferase,Protein-beta-Aspartate Methyltransferase,pcm Gene Product,Carboxymethyltransferase, L-Isoaspartyl Protein,D Aspartyl L Isoaspartyl Methyltransferase,Gene Product, PCMT1,Gene Product, pcm,Isoaspartyl Aspartyl Protein Methyltransferase,L Isoaspartyl Protein Carboxymethyltransferase,L-Isoaspartate O-Methyltransferase, Protein,L-Isoaspartyl Methyltransferase, Protein,Methyltransferase, D-Aspartyl-L-Isoaspartyl,Methyltransferase, Isoaspartyl-Aspartyl Protein,Methyltransferase, Protein D-Aspartate-L-Isoaspartate,Methyltransferase, Protein L-Isoaspartyl,Methyltransferase, Protein-D-Asp,Methyltransferase, Protein-D-Aspartate,Methyltransferase, Protein-L-Isoaspartate,Methyltransferase, Protein-beta-Aspartate,O-Methyltransferase, Protein L-Isoaspartate,PIMT, Methyltransferase,Protein Carboxymethyltransferase, L-Isoaspartyl,Protein D Asp Methyltransferase,Protein D Aspartate L Isoaspartate Methyltransferase,Protein D Aspartate Methyltransferase,Protein L Isoaspartate D Aspartate O Methyltransferase,Protein L Isoaspartate Methyltransferase,Protein L Isoaspartate O Methyltransferase,Protein L Isoaspartyl Methyltransferase,Protein Methyltransferase, Isoaspartyl-Aspartyl,Protein beta Aspartate Methyltransferase

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