Biomaterial Database

Viewing Ca2+-binding sites in the inositol trisphosphate receptor. 2023

Olesia Lunko, and J Kevin Foskett

Department of Physiology, Perelman School of Medicine, University of Pennsylvania, 700D Clinical Research Building, 415 Curie Blvd, Philadelphia, PA 19104, USA.

Ca2+ is a major ligand of the inositol 1,4,5-trisphosphate receptor (IP3R) Ca2+-release channel. Fan et al. [1] recently solved additional cryo-electron microscopy (cryo-EM) structures of the IP3R in different ligand-binding states, revealing new Ca2+ binding sites.

UI	MeSH Term	Description	Entries
D008024	Ligands	A molecule that binds to another molecule, used especially to refer to a small molecule that binds specifically to a larger molecule, e.g., an antigen binding to an antibody, a hormone or neurotransmitter binding to a receptor, or a substrate or allosteric effector binding to an enzyme. Ligands are also molecules that donate or accept a pair of electrons to form a coordinate covalent bond with the central metal atom of a coordination complex. (From Dorland, 27th ed)	Ligand
D002118	Calcium	A basic element found in nearly all tissues. It is a member of the alkaline earth family of metals with the atomic symbol Ca, atomic number 20, and atomic weight 40. Calcium is the most abundant mineral in the body and combines with phosphorus to form calcium phosphate in the bones and teeth. It is essential for the normal functioning of nerves and muscles and plays a role in blood coagulation (as factor IV) and in many enzymatic processes.	Coagulation Factor IV,Factor IV,Blood Coagulation Factor IV,Calcium-40,Calcium 40,Factor IV, Coagulation
D001665	Binding Sites	The parts of a macromolecule that directly participate in its specific combination with another molecule.	Combining Site,Binding Site,Combining Sites,Site, Binding,Site, Combining,Sites, Binding,Sites, Combining
D015544	Inositol 1,4,5-Trisphosphate	Intracellular messenger formed by the action of phospholipase C on phosphatidylinositol 4,5-bisphosphate, which is one of the phospholipids that make up the cell membrane. Inositol 1,4,5-trisphosphate is released into the cytoplasm where it releases calcium ions from internal stores within the cell's endoplasmic reticulum. These calcium ions stimulate the activity of B kinase or calmodulin.	1,4,5-InsP3,Inositol 1,4,5-Triphosphate,Myo-Inositol 1,4,5-Trisphosphate,1,4,5-IP3,Myoinositol 1,4,5-Triphosphate
D053496	Inositol 1,4,5-Trisphosphate Receptors	Intracellular receptors that bind to INOSITOL 1,4,5-TRISPHOSPHATE and play an important role in its intracellular signaling. Inositol 1,4,5-trisphosphate receptors are calcium channels that release CALCIUM in response to increased levels of inositol 1,4,5-trisphosphate in the CYTOPLASM.	Inositol 1,4,5-Triphosphate Receptor,Inositol 1,4,5-Triphosphate Receptors,Inositol 1,4,5-Trisphosphate Receptor,1,4,5-INTP Receptor,INSP3 Receptor,INSP3 Receptor Type 1,INSP3 Receptor Type 2,INSP3 Receptor Type 3,IP3 Receptor,Inositol 1,4,5-trisphosphate Receptor Subtype 3,Inositol 1,4,5-trisphosphate Receptor Type 1,Inositol 1,4,5-trisphosphate Receptor Type 2,Inositol 1,4,5-trisphosphate Receptor Type 3,Inositol Triphosphate Receptor,Inositol-1,4,5-Triphosphate Receptor,Receptor, Inositol-1,4,5-triphosphate,Type 1 Inositol 1,4,5-trisphosphate Receptor,Type 3 Inositol 1,4,5-trisphosphate Receptor,Receptor, INSP3,Receptor, IP3,Receptor, Inositol Triphosphate,Triphosphate Receptor, Inositol
D020285	Cryoelectron Microscopy	Electron microscopy involving rapid freezing of the samples. The imaging of frozen-hydrated molecules and organelles permits the best possible resolution closest to the living state, free of chemical fixatives or stains.	Electron Cryomicroscopy,Cryo-electron Microscopy,Cryo electron Microscopy,Cryo-electron Microscopies,Cryoelectron Microscopies,Cryomicroscopies, Electron,Cryomicroscopy, Electron,Electron Cryomicroscopies,Microscopies, Cryo-electron,Microscopies, Cryoelectron,Microscopy, Cryo-electron,Microscopy, Cryoelectron