Layer-by-layer (LbL) assembly of the alternating adsorption of oppositely charged polyions is an extensively studied method to produce nanofiltration membranes. In this work, the concept of chaotropicity of the polycation and its counterion is introduced in the LbL field. In general, the more chaotropic a polyion, the lower its effective charge, charge availability, and hydrophilicity. Here, this is researched for the well-known PDADMAC (polydiallyldimethylammonium chloride) and PAH (poly(allylamine) hydrochloride), and the synthesized PAMA (polyallylmultimethylammonium), with two different counterions (I- and Cl-). Higher chaotropicity (PDADMAC > PAMA-I > PAMA-Cl > PAH) translates into a reduced charge availability and a more pronounced extrinsic charge compensation, resulting in more mass adsorption and a higher pure water permeability. PAMA-containing membranes show the most interesting results in the series. Due to its molecular structure, the chaotropicity of this polycation perfectly lies between PDADMAC and PAH. Overall, the chaotropicity of PAMA membranes allows for the formation of the right balance between extrinsic and intrinsic charge compensation with PSS. Moreover, modifying the nature of the counterions of PAMA (I- or Cl-) allows to tune the density of the multilayer and results in lower size exclusion abilities with PAMA-I compared to PAMA-Cl (higher MWCO and lower MgSO4 retention). In general, the contextualization of the polyion interaction within the specific (poly)ion effects expands the understanding of the influence of the charge density of polycations without ignoring the chemical nature of the functional groups in their monomer units.