Nucleotide binding halts diffusion of the eukaryotic replicative helicase during activation. 2023

Daniel Ramírez Montero, and Humberto Sánchez, and Edo van Veen, and Theo van Laar, and Belén Solano, and John F X Diffley, and Nynke H Dekker
Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, The Netherlands.

The eukaryotic replicative helicase CMG centrally orchestrates the replisome and leads the way at the front of replication forks. Understanding the motion of CMG on the DNA is therefore key to our understanding of DNA replication. In vivo, CMG is assembled and activated through a cell-cycle-regulated mechanism involving 36 polypeptides that has been reconstituted from purified proteins in ensemble biochemical studies. Conversely, single-molecule studies of CMG motion have thus far relied on pre-formed CMG assembled through an unknown mechanism upon overexpression of individual constituents. Here, we report the activation of CMG fully reconstituted from purified yeast proteins and the quantification of its motion at the single-molecule level. We observe that CMG can move on DNA in two ways: by unidirectional translocation and by diffusion. We demonstrate that CMG preferentially exhibits unidirectional translocation in the presence of ATP, whereas it preferentially exhibits diffusive motion in the absence of ATP. We also demonstrate that nucleotide binding halts diffusive CMG independently of DNA melting. Taken together, our findings support a mechanism by which nucleotide binding allows newly assembled CMG to engage with the DNA within its central channel, halting its diffusion and facilitating the initial DNA melting required to initiate DNA replication.

UI MeSH Term Description Entries
D009711 Nucleotides The monomeric units from which DNA or RNA polymers are constructed. They consist of a purine or pyrimidine base, a pentose sugar, and a phosphate group. (From King & Stansfield, A Dictionary of Genetics, 4th ed) Nucleotide
D004247 DNA A deoxyribonucleotide polymer that is the primary genetic material of all cells. Eukaryotic and prokaryotic organisms normally contain DNA in a double-stranded state, yet several important biological processes transiently involve single-stranded regions. DNA, which consists of a polysugar-phosphate backbone possessing projections of purines (adenine and guanine) and pyrimidines (thymine and cytosine), forms a double helix that is held together by hydrogen bonds between these purines and pyrimidines (adenine to thymine and guanine to cytosine). DNA, Double-Stranded,Deoxyribonucleic Acid,ds-DNA,DNA, Double Stranded,Double-Stranded DNA,ds DNA
D004261 DNA Replication The process by which a DNA molecule is duplicated. Autonomous Replication,Replication, Autonomous,Autonomous Replications,DNA Replications,Replication, DNA,Replications, Autonomous,Replications, DNA
D004265 DNA Helicases Proteins that catalyze the unwinding of duplex DNA during replication by binding cooperatively to single-stranded regions of DNA or to short regions of duplex DNA that are undergoing transient opening. In addition, DNA helicases are DNA-dependent ATPases that harness the free energy of ATP hydrolysis to translocate DNA strands. ATP-Dependent DNA Helicase,DNA Helicase,DNA Unwinding Protein,DNA Unwinding Proteins,ATP-Dependent DNA Helicases,DNA Helicase A,DNA Helicase E,DNA Helicase II,DNA Helicase III,ATP Dependent DNA Helicase,ATP Dependent DNA Helicases,DNA Helicase, ATP-Dependent,DNA Helicases, ATP-Dependent,Helicase, ATP-Dependent DNA,Helicase, DNA,Helicases, ATP-Dependent DNA,Helicases, DNA,Protein, DNA Unwinding,Unwinding Protein, DNA,Unwinding Proteins, DNA
D000255 Adenosine Triphosphate An adenine nucleotide containing three phosphate groups esterified to the sugar moiety. In addition to its crucial roles in metabolism adenosine triphosphate is a neurotransmitter. ATP,Adenosine Triphosphate, Calcium Salt,Adenosine Triphosphate, Chromium Salt,Adenosine Triphosphate, Magnesium Salt,Adenosine Triphosphate, Manganese Salt,Adenylpyrophosphate,CaATP,CrATP,Manganese Adenosine Triphosphate,MgATP,MnATP,ATP-MgCl2,Adenosine Triphosphate, Chromium Ammonium Salt,Adenosine Triphosphate, Magnesium Chloride,Atriphos,Chromium Adenosine Triphosphate,Cr(H2O)4 ATP,Magnesium Adenosine Triphosphate,Striadyne,ATP MgCl2
D056890 Eukaryota One of the three domains of life (the others being BACTERIA and ARCHAEA), also called Eukarya. These are organisms whose cells are enclosed in membranes and possess a nucleus. They comprise almost all multicellular and many unicellular organisms, and are traditionally divided into groups (sometimes called kingdoms) including ANIMALS; PLANTS; FUNGI; and various algae and other taxa that were previously part of the old kingdom Protista. Eukaryotes,Eucarya,Eukarya,Eukaryotas,Eukaryote

Related Publications

Daniel Ramírez Montero, and Humberto Sánchez, and Edo van Veen, and Theo van Laar, and Belén Solano, and John F X Diffley, and Nynke H Dekker
January 2012, Sub-cellular biochemistry,
Daniel Ramírez Montero, and Humberto Sánchez, and Edo van Veen, and Theo van Laar, and Belén Solano, and John F X Diffley, and Nynke H Dekker
January 2005, IUBMB life,
Daniel Ramírez Montero, and Humberto Sánchez, and Edo van Veen, and Theo van Laar, and Belén Solano, and John F X Diffley, and Nynke H Dekker
May 2019, Nature communications,
Daniel Ramírez Montero, and Humberto Sánchez, and Edo van Veen, and Theo van Laar, and Belén Solano, and John F X Diffley, and Nynke H Dekker
February 2020, Nature communications,
Daniel Ramírez Montero, and Humberto Sánchez, and Edo van Veen, and Theo van Laar, and Belén Solano, and John F X Diffley, and Nynke H Dekker
March 2018, Nature,
Daniel Ramírez Montero, and Humberto Sánchez, and Edo van Veen, and Theo van Laar, and Belén Solano, and John F X Diffley, and Nynke H Dekker
May 2016, The EMBO journal,
Daniel Ramírez Montero, and Humberto Sánchez, and Edo van Veen, and Theo van Laar, and Belén Solano, and John F X Diffley, and Nynke H Dekker
March 2016, Nature structural & molecular biology,
Daniel Ramírez Montero, and Humberto Sánchez, and Edo van Veen, and Theo van Laar, and Belén Solano, and John F X Diffley, and Nynke H Dekker
February 2016, Nature communications,
Daniel Ramírez Montero, and Humberto Sánchez, and Edo van Veen, and Theo van Laar, and Belén Solano, and John F X Diffley, and Nynke H Dekker
September 2011, Cell,
Daniel Ramírez Montero, and Humberto Sánchez, and Edo van Veen, and Theo van Laar, and Belén Solano, and John F X Diffley, and Nynke H Dekker
March 2015, Chromosoma,
Copied contents to your clipboard!