Escherichia coli DNA repair helicase Lhr is also a uracil-DNA glycosylase. 2023

Ryan J Buckley, and Anna Lou-Hing, and Karl M Hanson, and Nadia R Ahmed, and Christopher D O Cooper, and Edward L Bolt
School of Life Sciences, University of Nottingham, Nottingham, UK.

DNA glycosylases protect genetic fidelity during DNA replication by removing potentially mutagenic chemically damaged DNA bases. Bacterial Lhr proteins are well-characterized DNA repair helicases that are fused to additional 600-700 amino acids of unknown function, but with structural homology to SecB chaperones and AlkZ DNA glycosylases. Here, we identify that Escherichia coli Lhr is a uracil-DNA glycosylase (UDG) that depends on an active site aspartic acid residue. We show that the Lhr DNA helicase activity is functionally independent of the UDG activity, but that the helicase domains are required for fully active UDG activity. Consistent with UDG activity, deletion of lhr from the E. coli chromosome sensitized cells to oxidative stress that triggers cytosine deamination to uracil. The ability of Lhr to translocate single-stranded DNA and remove uracil bases suggests a surveillance role to seek and remove potentially mutagenic base changes during replication stress.

UI MeSH Term Description Entries
D004247 DNA A deoxyribonucleotide polymer that is the primary genetic material of all cells. Eukaryotic and prokaryotic organisms normally contain DNA in a double-stranded state, yet several important biological processes transiently involve single-stranded regions. DNA, which consists of a polysugar-phosphate backbone possessing projections of purines (adenine and guanine) and pyrimidines (thymine and cytosine), forms a double helix that is held together by hydrogen bonds between these purines and pyrimidines (adenine to thymine and guanine to cytosine). DNA, Double-Stranded,Deoxyribonucleic Acid,ds-DNA,DNA, Double Stranded,Double-Stranded DNA,ds DNA
D004260 DNA Repair The removal of DNA LESIONS and/or restoration of intact DNA strands without BASE PAIR MISMATCHES, intrastrand or interstrand crosslinks, or discontinuities in the DNA sugar-phosphate backbones. DNA Damage Response
D004265 DNA Helicases Proteins that catalyze the unwinding of duplex DNA during replication by binding cooperatively to single-stranded regions of DNA or to short regions of duplex DNA that are undergoing transient opening. In addition, DNA helicases are DNA-dependent ATPases that harness the free energy of ATP hydrolysis to translocate DNA strands. ATP-Dependent DNA Helicase,DNA Helicase,DNA Unwinding Protein,DNA Unwinding Proteins,ATP-Dependent DNA Helicases,DNA Helicase A,DNA Helicase E,DNA Helicase II,DNA Helicase III,ATP Dependent DNA Helicase,ATP Dependent DNA Helicases,DNA Helicase, ATP-Dependent,DNA Helicases, ATP-Dependent,Helicase, ATP-Dependent DNA,Helicase, DNA,Helicases, ATP-Dependent DNA,Helicases, DNA,Protein, DNA Unwinding,Unwinding Protein, DNA,Unwinding Proteins, DNA
D004926 Escherichia coli A species of gram-negative, facultatively anaerobic, rod-shaped bacteria (GRAM-NEGATIVE FACULTATIVELY ANAEROBIC RODS) commonly found in the lower part of the intestine of warm-blooded animals. It is usually nonpathogenic, but some strains are known to produce DIARRHEA and pyogenic infections. Pathogenic strains (virotypes) are classified by their specific pathogenic mechanisms such as toxins (ENTEROTOXIGENIC ESCHERICHIA COLI), etc. Alkalescens-Dispar Group,Bacillus coli,Bacterium coli,Bacterium coli commune,Diffusely Adherent Escherichia coli,E coli,EAggEC,Enteroaggregative Escherichia coli,Enterococcus coli,Diffusely Adherent E. coli,Enteroaggregative E. coli,Enteroinvasive E. coli,Enteroinvasive Escherichia coli
D000595 Amino Acid Sequence The order of amino acids as they occur in a polypeptide chain. This is referred to as the primary structure of proteins. It is of fundamental importance in determining PROTEIN CONFORMATION. Protein Structure, Primary,Amino Acid Sequences,Sequence, Amino Acid,Sequences, Amino Acid,Primary Protein Structure,Primary Protein Structures,Protein Structures, Primary,Structure, Primary Protein,Structures, Primary Protein
D001426 Bacterial Proteins Proteins found in any species of bacterium. Bacterial Gene Products,Bacterial Gene Proteins,Gene Products, Bacterial,Bacterial Gene Product,Bacterial Gene Protein,Bacterial Protein,Gene Product, Bacterial,Gene Protein, Bacterial,Gene Proteins, Bacterial,Protein, Bacterial,Proteins, Bacterial
D014498 Uracil One of four nucleotide bases in the nucleic acid RNA.
D051981 Uracil-DNA Glycosidase An enzyme that catalyzes the HYDROLYSIS of the N-glycosidic bond between sugar phosphate backbone and URACIL residue during DNA synthesis. Ung DNA Glycosylase,Ura-DNA Glycosidase,Ura-DNA Glycosylase,Uracil DNA Glycosylase,Uracil N-Glycosidase,Uracil N-Glycosylase,Uracil-DNA Glycosylase,DNA Glycosylase, Ung,DNA Glycosylase, Uracil,Glycosidase, Ura-DNA,Glycosidase, Uracil-DNA,Glycosylase, Ung DNA,Glycosylase, Ura-DNA,Glycosylase, Uracil DNA,Glycosylase, Uracil-DNA,N-Glycosidase, Uracil,N-Glycosylase, Uracil,Ura DNA Glycosidase,Ura DNA Glycosylase,Uracil DNA Glycosidase,Uracil N Glycosidase,Uracil N Glycosylase

Related Publications

Ryan J Buckley, and Anna Lou-Hing, and Karl M Hanson, and Nadia R Ahmed, and Christopher D O Cooper, and Edward L Bolt
January 1980, Methods in enzymology,
Ryan J Buckley, and Anna Lou-Hing, and Karl M Hanson, and Nadia R Ahmed, and Christopher D O Cooper, and Edward L Bolt
December 2010, The Journal of biological chemistry,
Ryan J Buckley, and Anna Lou-Hing, and Karl M Hanson, and Nadia R Ahmed, and Christopher D O Cooper, and Edward L Bolt
June 2003, The Journal of biological chemistry,
Ryan J Buckley, and Anna Lou-Hing, and Karl M Hanson, and Nadia R Ahmed, and Christopher D O Cooper, and Edward L Bolt
August 2002, Journal of molecular biology,
Ryan J Buckley, and Anna Lou-Hing, and Karl M Hanson, and Nadia R Ahmed, and Christopher D O Cooper, and Edward L Bolt
April 2022, Biophysical journal,
Ryan J Buckley, and Anna Lou-Hing, and Karl M Hanson, and Nadia R Ahmed, and Christopher D O Cooper, and Edward L Bolt
May 1984, Gene,
Ryan J Buckley, and Anna Lou-Hing, and Karl M Hanson, and Nadia R Ahmed, and Christopher D O Cooper, and Edward L Bolt
June 1978, Journal of bacteriology,
Ryan J Buckley, and Anna Lou-Hing, and Karl M Hanson, and Nadia R Ahmed, and Christopher D O Cooper, and Edward L Bolt
April 1991, Biochemistry,
Ryan J Buckley, and Anna Lou-Hing, and Karl M Hanson, and Nadia R Ahmed, and Christopher D O Cooper, and Edward L Bolt
November 1978, Journal of biochemistry,
Ryan J Buckley, and Anna Lou-Hing, and Karl M Hanson, and Nadia R Ahmed, and Christopher D O Cooper, and Edward L Bolt
November 2003, Proceedings of the National Academy of Sciences of the United States of America,
Copied contents to your clipboard!