Histones are nuclear proteins which repress gene transcription and modify chromosome structure. They are remarkably conservative in structure throughout a wide evolutionary array of plants and animals; however, quantitative histone differences have been detected by cytological means in species having extra chromosomes. The purpose of this study was to: 1) isolate and characterize the histones of several Gossypium species and 2) relate differences to known differences in vigor, ploidy level, and genome constitution or size. Histones extracted from isolated nuclei of leaf tissues were characterized by electrophoresis on polyacrylamide gels into 14 subfractions of the five major histone classes. The subfractions were identified by various means including co-electrophoresis with known histone standards. Densitometric analysis revealed only slight quantitative differences in subfraction ratios between species. Histone-DNA ratios were significantly higher in the pentaploid species. This observed increase is considered a result of genome imbalance. These data support the premise that histones may function as generalized gene deactivators in plant species having multiple genomes.