Dark-adapted bacteriorhodopsin contains 13-cis, 15-syn and all-trans, 15-anti retinal Schiff bases. 1984

G S Harbison, and S O Smith, and J A Pardoen, and C Winkel, and J Lugtenburg, and J Herzfeld, and R Mathies, and R G Griffin

13C NMR spectra of lyophilized dark-adapted [14-13C]retinyl-labeled bacteriorhodopsin show a large anomalous upfield shift for the 13C-14 resonance assigned to the 13-cis isomer, relative to both the all-trans isomer and model compounds. We attribute this to the so-called gamma effect, which results from a steric interaction between the C-14 retinal proton and the protons on the epsilon CH2 of the lysine. As a consequence of this observation, we infer that dark-adapted bacteriorhodopsin is composed of a mixture of all-trans, 15-anti (trans or E) and 13-cis, 15-syn (cis or Z) isomers. These occur in an approximate 4:6 ratio and are commonly identified as bR568 and bR548. This conclusion is based on an examination of the isotropic and anisotropic chemical shifts and a comparison with 13C shifts of the carbons adjacent to the C = N linkage in protonated ketimines. Other possible origins for the anomalous shift are examined and shown to be insufficient to account for either the size of the shift or the nature of the shift tensor. We discuss the consequences of this finding for the structure and photochemistry of bacteriorhodopsin.

UI MeSH Term Description Entries
D007536 Isomerism The phenomenon whereby certain chemical compounds have structures that are different although the compounds possess the same elemental composition. (From McGraw-Hill Dictionary of Scientific and Technical Terms, 5th ed) Isomerisms
D009682 Magnetic Resonance Spectroscopy Spectroscopic method of measuring the magnetic moment of elementary particles such as atomic nuclei, protons or electrons. It is employed in clinical applications such as NMR Tomography (MAGNETIC RESONANCE IMAGING). In Vivo NMR Spectroscopy,MR Spectroscopy,Magnetic Resonance,NMR Spectroscopy,NMR Spectroscopy, In Vivo,Nuclear Magnetic Resonance,Spectroscopy, Magnetic Resonance,Spectroscopy, NMR,Spectroscopy, Nuclear Magnetic Resonance,Magnetic Resonance Spectroscopies,Magnetic Resonance, Nuclear,NMR Spectroscopies,Resonance Spectroscopy, Magnetic,Resonance, Magnetic,Resonance, Nuclear Magnetic,Spectroscopies, NMR,Spectroscopy, MR
D002338 Carotenoids The general name for a group of fat-soluble pigments found in green, yellow, and leafy vegetables, and yellow fruits. They are aliphatic hydrocarbons containing 4 terpene subunits. Carotenes,Carotenoid,Tetraterpene Derivatives,Tetraterpenes,Carotene,Derivatives, Tetraterpene
D003623 Dark Adaptation Adjustment of the eyes under conditions of low light. The sensitivity of the eye to light is increased during dark adaptation. Scotopic Adaptation,Adaptation, Dark,Adaptation, Scotopic
D006217 Halobacterium A genus of HALOBACTERIACEAE whose growth requires a high concentration of salt. Binary fission is by constriction.
D001436 Bacteriorhodopsins Rhodopsins found in the PURPLE MEMBRANE of halophilic archaea such as HALOBACTERIUM HALOBIUM. Bacteriorhodopsins function as an energy transducers, converting light energy into electrochemical energy via PROTON PUMPS. Bacteriorhodopsin
D012172 Retinaldehyde A diterpene derived from the carotenoid VITAMIN A which functions as the active component of the visual cycle. It is the prosthetic group of RHODOPSIN (i.e., covalently bonded to ROD OPSIN as 11-cis-retinal). When stimulated by visible light, rhodopsin transforms this cis-isomer of retinal to the trans-isomer (11-trans-retinal). This transformation straightens-out the bend of the retinal molecule and causes a change in the shape of rhodopsin triggering the visual process. A series of energy-requiring enzyme-catalyzed reactions convert the 11-trans-retinal back to the cis-isomer. 11-trans-Retinal,3,7-dimethyl-9-(2,6,6-trimethyl-1-cyclohexen-1-yl)-2,4,6,8-Nonatetraenal,Axerophthal,Retinal,Retinene,Retinyl Aldehydde,Vitamin A Aldehyde,all-trans-Retinal,11-cis-Retinal,11 cis Retinal,11 trans Retinal,Aldehydde, Retinyl,Aldehyde, Vitamin A,all trans Retinal
D012176 Retinoids A group of tetraterpenes, with four terpene units joined head-to-tail. Biologically active members of this class are used clinically in the treatment of severe cystic ACNE; PSORIASIS; and other disorders of keratinization. Retinoid

Related Publications

G S Harbison, and S O Smith, and J A Pardoen, and C Winkel, and J Lugtenburg, and J Herzfeld, and R Mathies, and R G Griffin
July 2021, Angewandte Chemie (International ed. in English),
G S Harbison, and S O Smith, and J A Pardoen, and C Winkel, and J Lugtenburg, and J Herzfeld, and R Mathies, and R G Griffin
May 1989, Biochemistry,
G S Harbison, and S O Smith, and J A Pardoen, and C Winkel, and J Lugtenburg, and J Herzfeld, and R Mathies, and R G Griffin
April 2002, Journal of photochemistry and photobiology. B, Biology,
G S Harbison, and S O Smith, and J A Pardoen, and C Winkel, and J Lugtenburg, and J Herzfeld, and R Mathies, and R G Griffin
December 2002, European biophysics journal : EBJ,
G S Harbison, and S O Smith, and J A Pardoen, and C Winkel, and J Lugtenburg, and J Herzfeld, and R Mathies, and R G Griffin
November 1973, The Journal of biological chemistry,
G S Harbison, and S O Smith, and J A Pardoen, and C Winkel, and J Lugtenburg, and J Herzfeld, and R Mathies, and R G Griffin
September 2005, Journal of molecular biology,
G S Harbison, and S O Smith, and J A Pardoen, and C Winkel, and J Lugtenburg, and J Herzfeld, and R Mathies, and R G Griffin
September 2011, Journal of chemical theory and computation,
G S Harbison, and S O Smith, and J A Pardoen, and C Winkel, and J Lugtenburg, and J Herzfeld, and R Mathies, and R G Griffin
September 2015, Biochemistry,
G S Harbison, and S O Smith, and J A Pardoen, and C Winkel, and J Lugtenburg, and J Herzfeld, and R Mathies, and R G Griffin
August 1974, Photochemistry and photobiology,
G S Harbison, and S O Smith, and J A Pardoen, and C Winkel, and J Lugtenburg, and J Herzfeld, and R Mathies, and R G Griffin
March 1997, Biochemical pharmacology,
Copied contents to your clipboard!