The binding of fluorescein-labeled protein synthesis initiation factor 2 to Escherichia coli 30 S ribosomal subunits determined by fluorescence polarization. 1982

J Weiel, and J W Hershey

The binding of initiation factor IF2 to 30 S ribosomal subunits was studied quantitatively by steady state fluorescence polarization techniques. Covalent fluorescent derivatives of IF2 were prepared by treating the pure factor with fluorescein isothiocyanate. Derivatives (F-IF2) containing about 1 fluorescein molecule/protein bound to 30 S ribosomal subunits as measured by sucrose gradient centrifugation; however, their activity is slightly impaired in assays for stimulation of formylmethionyl-tRNA binding to 70 S ribosomes. Upon addition of 30 S ribosomal subunits to F-IF2 solutions, a significant increase in fluorescence polarization results, but no change in quantum yield or fluorescence lifetime is detected. Fluorescence polarization values were measured at different F-IF2 and 30 S ribosomal subunit concentrations and the equilibrium association constant and number of ribosomal binding sites were calculated. The association constant for F-IF2 in buffer containing 100 mM NH4Cl and 10 mM Mg acetate is 1.5 +/- 0.2 X 10(7) M-1; the number of binding sites is 0.9 +/- 0.2. Competition of F-IF2 with IF2 showed that the nonderivatized factor binds somewhat more tightly than F-IF2, with an association constant of 2.7 X 10(7) M-1. The binding of F-IF2 is strongly inhibited by raising the NH4Cl concentration from 20 mM to 150 mM, but is rather insensitive to Mg acetate concentrations between 2.5 and 10 mM. Addition of initiation factors IF1 and IF3 causes a 3-fold increase in the association constant for F-If2 binding to 30 S subunits.

UI MeSH Term Description Entries
D007700 Kinetics The rate dynamics in chemical or physical systems.
D010445 Peptide Elongation Factors Protein factors uniquely required during the elongation phase of protein synthesis. Elongation Factor,Elongation Factors, Peptide,Factor, Elongation,Factors, Peptide Elongation
D011485 Protein Binding The process in which substances, either endogenous or exogenous, bind to proteins, peptides, enzymes, protein precursors, or allied compounds. Specific protein-binding measures are often used as assays in diagnostic assessments. Plasma Protein Binding Capacity,Binding, Protein
D004926 Escherichia coli A species of gram-negative, facultatively anaerobic, rod-shaped bacteria (GRAM-NEGATIVE FACULTATIVELY ANAEROBIC RODS) commonly found in the lower part of the intestine of warm-blooded animals. It is usually nonpathogenic, but some strains are known to produce DIARRHEA and pyogenic infections. Pathogenic strains (virotypes) are classified by their specific pathogenic mechanisms such as toxins (ENTEROTOXIGENIC ESCHERICHIA COLI), etc. Alkalescens-Dispar Group,Bacillus coli,Bacterium coli,Bacterium coli commune,Diffusely Adherent Escherichia coli,E coli,EAggEC,Enteroaggregative Escherichia coli,Enterococcus coli,Diffusely Adherent E. coli,Enteroaggregative E. coli,Enteroinvasive E. coli,Enteroinvasive Escherichia coli
D005452 Fluoresceins A family of spiro(isobenzofuran-1(3H),9'-(9H)xanthen)-3-one derivatives. These are used as dyes, as indicators for various metals, and as fluorescent labels in immunoassays. Tetraiodofluorescein
D000643 Ammonium Chloride An acidifying agent that has expectorant and diuretic effects. Also used in etching and batteries and as a flux in electroplating. Sal Ammoniac,Ammoniac, Sal,Chloride, Ammonium
D012270 Ribosomes Multicomponent ribonucleoprotein structures found in the CYTOPLASM of all cells, and in MITOCHONDRIA, and PLASTIDS. They function in PROTEIN BIOSYNTHESIS via GENETIC TRANSLATION. Ribosome
D013050 Spectrometry, Fluorescence Measurement of the intensity and quality of fluorescence. Fluorescence Spectrophotometry,Fluorescence Spectroscopy,Spectrofluorometry,Fluorescence Spectrometry,Spectrophotometry, Fluorescence,Spectroscopy, Fluorescence
D013861 Thiocyanates Organic derivatives of thiocyanic acid which contain the general formula R-SCN. Rhodanate,Rhodanates
D016650 Fluorescein-5-isothiocyanate Fluorescent probe capable of being conjugated to tissue and proteins. It is used as a label in fluorescent antibody staining procedures as well as protein- and amino acid-binding techniques. FITC,5-Isothiocyanatofluorescein,Fluorescein (5 or 6)-Isothiocyanate,Fluorescein-5-isothiocyanate Hydrochloride,5 Isothiocyanatofluorescein,Fluorescein 5 isothiocyanate,Fluorescein 5 isothiocyanate Hydrochloride,Hydrochloride, Fluorescein-5-isothiocyanate

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