Charge effects on the dynamic quenching of fluorescence of 1,N6-ethenoadenosine oligophosphates by iodide, thallium (I) and acrylamide. 1980

T Ando, and H Asai

Systematic studies were carried out to determine how the dynamic quenching of fluorescence was affected by electrostatic interaction between charges carried by the fluorophore and the quencher. 1,N6-Ethenoadenosine oligophosphates (epsilon-ATP, epsilon-ADP, epsilon-AMP, and epsilon-Ad) were used as fluorophores; these compounds have the same luminous group (epsilon-adenine ring) with variously charged phosphate groups. Acrylamide and the iodide (I-), well known to be effective quenchers carrying zero and one negative charge, respectively, were used as quenchers. The thallium (I) (Tl+) was also found to be an effective quencher as a result of studies of the quenching activity of various positively charged ions. Results which agreed qualitatively with those expected were obtained for the charge effects on the dynamic quenching and the effects of ionic strength on it. That is, the repulsive force exerted between I- and phosphate groups decreased the quenching rate, and increasing ionic strength of solutions mitigated these charge effects. The results obtained, however, were not quantitatively consistent with theoretical expectations for ionic reaction rates in solutions. One reason for the quantitative disagreement is that the negatively charged phosphate groups are located at a distance from the luminous group. By theoretical analysis of the quenching data, the distance was calculated to be 9.6 A + delta r, where delta r changes according to the number of phosphate groups. Furthermore, through a theoretical analysis of the disagreement, we found a new factor, the "size effect" of a luminous group, which modifies the charge effects on dynamic quenching. The size effect provides information on the gradient of the electric potential generated by the phosphate groups. These studies provide a basis for the study of electric potential at local regions of proteins.

UI MeSH Term Description Entries
D007454 Iodides Inorganic binary compounds of iodine or the I- ion. Iodide
D007700 Kinetics The rate dynamics in chemical or physical systems.
D008433 Mathematics The deductive study of shape, quantity, and dependence. (From McGraw-Hill Dictionary of Scientific and Technical Terms, 6th ed) Mathematic
D009994 Osmolar Concentration The concentration of osmotically active particles in solution expressed in terms of osmoles of solute per liter of solution. Osmolality is expressed in terms of osmoles of solute per kilogram of solvent. Ionic Strength,Osmolality,Osmolarity,Concentration, Osmolar,Concentrations, Osmolar,Ionic Strengths,Osmolalities,Osmolar Concentrations,Osmolarities,Strength, Ionic,Strengths, Ionic
D002621 Chemistry A basic science concerned with the composition, structure, and properties of matter; and the reactions that occur between substances and the associated energy exchange.
D000178 Acrylamides Colorless, odorless crystals that are used extensively in research laboratories for the preparation of polyacrylamide gels for electrophoresis and in organic synthesis, and polymerization. Some of its polymers are used in sewage and wastewater treatment, permanent press fabrics, and as soil conditioning agents.
D000227 Adenine Nucleotides Adenine Nucleotide,Adenosine Phosphate,Adenosine Phosphates,Nucleotide, Adenine,Nucleotides, Adenine,Phosphate, Adenosine,Phosphates, Adenosine
D013050 Spectrometry, Fluorescence Measurement of the intensity and quality of fluorescence. Fluorescence Spectrophotometry,Fluorescence Spectroscopy,Spectrofluorometry,Fluorescence Spectrometry,Spectrophotometry, Fluorescence,Spectroscopy, Fluorescence
D013329 Structure-Activity Relationship The relationship between the chemical structure of a compound and its biological or pharmacological activity. Compounds are often classed together because they have structural characteristics in common including shape, size, stereochemical arrangement, and distribution of functional groups. Relationship, Structure-Activity,Relationships, Structure-Activity,Structure Activity Relationship,Structure-Activity Relationships
D013793 Thallium A heavy, bluish white metal, atomic number 81, atomic weight [204.382; 204.385], symbol Tl. Thallium-205,Thallium 205

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