Conformational gating of the dissimilatory sulfite reductase from Desulfovibrio vulgaris (Hildenborough). Synthesis, characterization, and stopped-flow kinetics studies of 1,5-IAEDANS-labeled desulfoviridin. 1994

S M Lui, and J A Cowan
Evans Laboratory of Chemistry, Ohio State University, Columbus 43210, USA.

The siroheme prosthetic center in the dissimilatory sulfite reductase (desulfoviridin) from Desulfovibrio vulgaris (Hildenborough) readily binds exogenous ligands in the reduced state, but it does not do so in the oxidized state. In contrast, free oxidized siroheme in solution is observed to bind ligands rapidly. This can only be explained by a structural barrier that precludes ligand binding to the enzyme in the oxidized state but is removed after reduction. These observations suggest a redox-linked structural transformation that provides a gating mechanism for enzyme activation. The rate constants defining these structural perturbations, from oxidized-->reduced and reduced-->oxidized states, have been determined by monitoring changes in both the natural emission from desulfoviridin and the emission from a surface-bound fluorophore (1,5-IAEDANS). Consistent results were obtained from these two independent experimental measurements (at 25 degrees C: kox-->red approximately 8 s-1, kred-->ox approximately 0.05 s-1). Activation energies for each transition have been determined from Arrhenius plots (ox-->red: delta G* 16.5 kcal mol-1, delta H* 3.5 kcal mol-1, delta S* -43.8 cal K-1 mol-1; red-->ox: delta G* 19.2 kcal mol-1, delta H* 11.3 kcal mol-1, delta S* -26.6 cal K-1 mol-1). These data are used to further develop a functional model previously proposed for this class of enzyme [Lui, S. M., Soriano, A., & Cowan, J. A. (1993) J. Am. Chem. Soc. 115, 10483; Lui, S. M., Liang, W., Soriano, A., & Cowan, J. A. (1994) J. Am. Chem. Soc. 116, 4531].(ABSTRACT TRUNCATED AT 250 WORDS)

UI MeSH Term Description Entries
D007700 Kinetics The rate dynamics in chemical or physical systems.
D009282 Naphthalenesulfonates A class of organic compounds that contains a naphthalene moiety linked to a sulfonic acid salt or ester.
D010084 Oxidation-Reduction A chemical reaction in which an electron is transferred from one molecule to another. The electron-donating molecule is the reducing agent or reductant; the electron-accepting molecule is the oxidizing agent or oxidant. Reducing and oxidizing agents function as conjugate reductant-oxidant pairs or redox pairs (Lehninger, Principles of Biochemistry, 1982, p471). Redox,Oxidation Reduction
D011487 Protein Conformation The characteristic 3-dimensional shape of a protein, including the secondary, supersecondary (motifs), tertiary (domains) and quaternary structure of the peptide chain. PROTEIN STRUCTURE, QUATERNARY describes the conformation assumed by multimeric proteins (aggregates of more than one polypeptide chain). Conformation, Protein,Conformations, Protein,Protein Conformations
D005456 Fluorescent Dyes Chemicals that emit light after excitation by light. The wave length of the emitted light is usually longer than that of the incident light. Fluorochromes are substances that cause fluorescence in other substances, i.e., dyes used to mark or label other compounds with fluorescent tags. Flourescent Agent,Fluorescent Dye,Fluorescent Probe,Fluorescent Probes,Fluorochrome,Fluorochromes,Fluorogenic Substrates,Fluorescence Agents,Fluorescent Agents,Fluorogenic Substrate,Agents, Fluorescence,Agents, Fluorescent,Dyes, Fluorescent,Probes, Fluorescent,Substrates, Fluorogenic
D013050 Spectrometry, Fluorescence Measurement of the intensity and quality of fluorescence. Fluorescence Spectrophotometry,Fluorescence Spectroscopy,Spectrofluorometry,Fluorescence Spectrometry,Spectrophotometry, Fluorescence,Spectroscopy, Fluorescence
D013816 Thermodynamics A rigorously mathematical analysis of energy relationships (heat, work, temperature, and equilibrium). It describes systems whose states are determined by thermal parameters, such as temperature, in addition to mechanical and electromagnetic parameters. (From Hawley's Condensed Chemical Dictionary, 12th ed) Thermodynamic
D013997 Time Factors Elements of limited time intervals, contributing to particular results or situations. Time Series,Factor, Time,Time Factor
D016969 Desulfovibrio vulgaris A species of gram-negative, anaerobic, rod-shaped bacteria isolated from soil, animal intestines and feces, and fresh and salt water.
D050862 Oxidoreductases Acting on Sulfur Group Donors Oxidoreductases with specificity for oxidation or reduction of SULFUR COMPOUNDS. Sulfite Reductase,Sulfite Dehydrogenases,Sulfite Oxidases,Sulfite Reductases,Dehydrogenases, Sulfite,Oxidases, Sulfite,Reductase, Sulfite,Reductases, Sulfite

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