Characterization and redox properties of high molecular mass cytochrome c3 (Hmc) isolated from Desulfovibrio vulgaris Miyazaki. 1993

M Ogata, and N Kiuchi, and T Yagi
Department of Chemistry, Shizuoka University, Japan.

Two kinds of high molecular mass cytochrome c3 (Hmc) were isolated from Desulfovibrio vulgaris Miyazaki, one from the membrane (mHmc), the other from the soluble fraction (sHmc). Molecular masses of both Hmcs determined by SDS-PAGE are 65 kDa. Each Hmc molecule is composed of a single polypeptide chain and contains 16 hemes. sHmc and mHmc have identical UV-visible absorption spectra of a typical c-type cytochrome (three peaks at 530, 419, and 355 nm in the ferri form, and four peaks at 553, 523, 419, and 325 nm in the ferro form), and similar amino acid composition. There is no peak at 695 nm in the ferri form, but a Soret peak (423 nm) with a shoulder at 432 nm, indicative of the presence of a high-spin heme, appeared at low reduction stage. Hmcs are fragile proteins and readily denatured by bubbling with gas or by stirring. From the redox titration of sHmc monitored spectroscopically in the presence of standard redox dyes, the midpoint potentials of 16 hemes (E1 approximately E16) were determined. These hemes are classified into four groups based on their Eis: positive (E1 = 60, E2 = 15 mV), slightly negative (E3 = E4 = E5 = E6 = E7 = -120, E8 = -125, E9 = -135 mV), negative (E10 = E11 = -190, E12 = E13 = -195, E14 = -205 mV), and very negative (E15 = E16 = -260 mV) groups (may be deviated from the true microscopic values due to heme-heme interactions). The role of Hmc in the energy metabolism of this bacterium is discussed.

UI MeSH Term Description Entries
D008970 Molecular Weight The sum of the weight of all the atoms in a molecule. Molecular Weights,Weight, Molecular,Weights, Molecular
D010084 Oxidation-Reduction A chemical reaction in which an electron is transferred from one molecule to another. The electron-donating molecule is the reducing agent or reductant; the electron-accepting molecule is the oxidizing agent or oxidant. Reducing and oxidizing agents function as conjugate reductant-oxidant pairs or redox pairs (Lehninger, Principles of Biochemistry, 1982, p471). Redox,Oxidation Reduction
D003574 Cytochrome c Group A group of cytochromes with covalent thioether linkages between either or both of the vinyl side chains of protoheme and the protein. (Enzyme Nomenclature, 1992, p539) Cytochromes Type c,Group, Cytochrome c,Type c, Cytochromes
D004591 Electrophoresis, Polyacrylamide Gel Electrophoresis in which a polyacrylamide gel is used as the diffusion medium. Polyacrylamide Gel Electrophoresis,SDS-PAGE,Sodium Dodecyl Sulfate-PAGE,Gel Electrophoresis, Polyacrylamide,SDS PAGE,Sodium Dodecyl Sulfate PAGE,Sodium Dodecyl Sulfate-PAGEs
D006418 Heme The color-furnishing portion of hemoglobin. It is found free in tissues and as the prosthetic group in many hemeproteins. Ferroprotoporphyrin,Protoheme,Haem,Heme b,Protoheme IX
D000596 Amino Acids Organic compounds that generally contain an amino (-NH2) and a carboxyl (-COOH) group. Twenty alpha-amino acids are the subunits which are polymerized to form proteins. Amino Acid,Acid, Amino,Acids, Amino
D013056 Spectrophotometry, Ultraviolet Determination of the spectra of ultraviolet absorption by specific molecules in gases or liquids, for example Cl2, SO2, NO2, CS2, ozone, mercury vapor, and various unsaturated compounds. (McGraw-Hill Dictionary of Scientific and Technical Terms, 4th ed) Ultraviolet Spectrophotometry
D016969 Desulfovibrio vulgaris A species of gram-negative, anaerobic, rod-shaped bacteria isolated from soil, animal intestines and feces, and fresh and salt water.

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