The catalytic mechanism of kynureninase from Pseudomonas fluorescens: evidence for transient quinonoid and ketimine intermediates from rapid-scanning stopped-flow spectrophotometry. 1998

R S Phillips, and B Sundararaju, and S V Koushik
Department of Chemistry, University of Georgia, Athens, Georgia 30602-2556, USA. phillips@bscr.uga.edu

The reaction of Pseudomonas fluorescens kynureninase with L-kynurenine and L-alanine has been examined using rapid-scanning stopped-flow spectrophotometry. Mixing kynureninase with 0.5 mM L-kynurenine results in formation of a quinonoid intermediate, with lambdamax = 494 nm, within the dead time (ca. 2 ms) of the stopped-flow mixer. This intermediate then decays rapidly, with k = 743 s-1, and this rate constant is reduced to 347 s-1 in [2H]H2O, suggesting that protonation of this intermediate by a solvent exchangeable proton takes place. Rapid quench experiments demonstrate that covalent changes in the cofactor occur, as pyridoxal 5'-phosphate is converted to pyridoxamine 5'-phosphate in about 30 mol % within 5 ms after mixing. Under single turnover conditions in the reaction of kynureninase with l-kynurenine, a transient shoulder absorbing at 335 nm is observed that may be a pyruvate ketimine intermediate. In contrast, the reaction of kynureninase with 0.5 mM l-kynurenine in the presence of 10 mM benzaldehyde results in the formation of a quinonoid intermediate (k = 67.4 s-1) with a very strong absorbance peak at 496 nm. The reaction of L-alanine with kynureninase exhibits the rapid formation (386 s-1 at 0.1 M) of an external aldimine intermediate absorbing at 420 nm, followed by slower formation of a quinonoid intermediate with a peak at 500 nm (k = 2.5 s-1). The 420 nm peak then decays slowly with concomitant formation of a peak at 320 nm corresponding to a pyruvate ketimine. These data demonstrate that quinonoid and ketimine intermediates are catalytically competent in the reaction mechanism of kynureninase, and provide additional support for our proposed mechanism for kynureninase from steady-state kinetic studies [Koushik, S. V., Sundararaju, B., and Phillips, R. S. Biochemistry 1998, 37, 1376-1382].

UI MeSH Term Description Entries
D007700 Kinetics The rate dynamics in chemical or physical systems.
D011551 Pseudomonas fluorescens A species of nonpathogenic fluorescent bacteria found in feces, sewage, soil, and water, and which liquefy gelatin. Bacillus fluorescens,Bacillus fluorescens liquefaciens,Bacterium fluorescens,Liquidomonas fluorescens
D006867 Hydrolases Any member of the class of enzymes that catalyze the cleavage of the substrate and the addition of water to the resulting molecules, e.g., ESTERASES, glycosidases (GLYCOSIDE HYDROLASES), lipases, NUCLEOTIDASES, peptidases (PEPTIDE HYDROLASES), and phosphatases (PHOSPHORIC MONOESTER HYDROLASES). EC 3. Hydrolase
D001426 Bacterial Proteins Proteins found in any species of bacterium. Bacterial Gene Products,Bacterial Gene Proteins,Gene Products, Bacterial,Bacterial Gene Product,Bacterial Gene Protein,Bacterial Protein,Gene Product, Bacterial,Gene Protein, Bacterial,Gene Proteins, Bacterial,Protein, Bacterial,Proteins, Bacterial
D013053 Spectrophotometry The art or process of comparing photometrically the relative intensities of the light in different parts of the spectrum.

Related Publications

R S Phillips, and B Sundararaju, and S V Koushik
January 1994, Methods of biochemical analysis,
R S Phillips, and B Sundararaju, and S V Koushik
April 1952, The Journal of biological chemistry,
R S Phillips, and B Sundararaju, and S V Koushik
February 2004, Biochemistry,
R S Phillips, and B Sundararaju, and S V Koushik
August 1999, Bioorganic & medicinal chemistry,
R S Phillips, and B Sundararaju, and S V Koushik
August 2013, Bioorganic & medicinal chemistry,
R S Phillips, and B Sundararaju, and S V Koushik
October 2008, The Journal of biological chemistry,
R S Phillips, and B Sundararaju, and S V Koushik
August 1999, Biochemistry,
Copied contents to your clipboard!