Quantitative structure/activity relationship for the rate of conversion of C4-substituted catechols by catechol-1,2-dioxygenase from Pseudomonas putida (arvilla) C1. 1998

L Ridder, and F Briganti, and M G Boersma, and S Boeren, and E H Vis, and A Scozzafava, and C Veeger, and I M Rietjens
Laboratory of Biochemistry, Agricultural University, Wageningen, The Netherlands. Lars.Ridder@p450.bc.wau.nl

The influence of various C4/C5 substituents in catechol (1,2-dihydroxybenzene) derivatives on the overall rate of conversion by catechol-1,2-dioxygenase from Pseudomonas putida (arvilla) C1 was investigated. Using catechol, 4-methylcatechol, 4-fluorocatechol, 4-chlorocatechol, 4-bromocatechol, 4,5-difluorocatechol and 4-chloro-5-fluorocatechol, it could be demonstrated that substituents at the C4 and/or C5 position decrease the rate of conversion, from 62% (4-methylcatechol) down to 0.7% (4-chloro-5-fluorocatechol) of the activity with non-substituted catechol. The inhibition was reversible upon addition of excess catechol for all substrates tested. This indicates that the lower activities are neither due to irreversible inactivation of the enzyme nor to product inhibition. Based on the reaction mechanism proposed in the literature [Que, L. & Ho, R. Y. N. (1996) Chem. Rev. 96, 2606-2624], the nucleophilic reactivity of the catecholate was expected to be an essential characteristic for its conversion by catechol-1,2-dioxygenase. Therefore, the rates of conversion were compared with calculated energies of the highest occupied molecular orbital (E(HOMO)) of the substrates. A clear quantitative relationship (R>0.97) between the ln kcat and the calculated electronic parameter E(HOMO) was obtained. This indicates that the rate-limiting step of the reaction cycle is dependent on the nucleophilic reactivity of the substrate and not sterically hindered by the relatively large bromine or methyl substituents used in the present study. Possible steps in the reaction mechanism determining the overall rate at 20 degrees C are discussed.

UI MeSH Term Description Entries
D007501 Iron A metallic element with atomic symbol Fe, atomic number 26, and atomic weight 55.85. It is an essential constituent of HEMOGLOBINS; CYTOCHROMES; and IRON-BINDING PROTEINS. It plays a role in cellular redox reactions and in the transport of OXYGEN. Iron-56,Iron 56
D007700 Kinetics The rate dynamics in chemical or physical systems.
D009682 Magnetic Resonance Spectroscopy Spectroscopic method of measuring the magnetic moment of elementary particles such as atomic nuclei, protons or electrons. It is employed in clinical applications such as NMR Tomography (MAGNETIC RESONANCE IMAGING). In Vivo NMR Spectroscopy,MR Spectroscopy,Magnetic Resonance,NMR Spectroscopy,NMR Spectroscopy, In Vivo,Nuclear Magnetic Resonance,Spectroscopy, Magnetic Resonance,Spectroscopy, NMR,Spectroscopy, Nuclear Magnetic Resonance,Magnetic Resonance Spectroscopies,Magnetic Resonance, Nuclear,NMR Spectroscopies,Resonance Spectroscopy, Magnetic,Resonance, Magnetic,Resonance, Nuclear Magnetic,Spectroscopies, NMR,Spectroscopy, MR
D010100 Oxygen An element with atomic symbol O, atomic number 8, and atomic weight [15.99903; 15.99977]. It is the most abundant element on earth and essential for respiration. Dioxygen,Oxygen-16,Oxygen 16
D010105 Oxygenases Oxidases that specifically introduce DIOXYGEN-derived oxygen atoms into a variety of organic molecules. Oxygenase
D002396 Catechols A group of 1,2-benzenediols that contain the general formula R-C6H5O2. Pyrocatechols,o-Dihydroxybenzenes,ortho-Dihydroxybenzenes,o Dihydroxybenzenes,ortho Dihydroxybenzenes
D013329 Structure-Activity Relationship The relationship between the chemical structure of a compound and its biological or pharmacological activity. Compounds are often classed together because they have structural characteristics in common including shape, size, stereochemical arrangement, and distribution of functional groups. Relationship, Structure-Activity,Relationships, Structure-Activity,Structure Activity Relationship,Structure-Activity Relationships
D013379 Substrate Specificity A characteristic feature of enzyme activity in relation to the kind of substrate on which the enzyme or catalytic molecule reacts. Specificities, Substrate,Specificity, Substrate,Substrate Specificities
D016958 Pseudomonas putida A species of gram-negative, aerobic bacteria isolated from soil and water as well as clinical specimens. Occasionally it is an opportunistic pathogen.
D049308 Dioxygenases Non-heme iron-containing enzymes that incorporate two atoms of OXYGEN into the substrate. They are important in biosynthesis of FLAVONOIDS; GIBBERELLINS; and HYOSCYAMINE; and for degradation of AROMATIC HYDROCARBONS. Dioxygenase

Related Publications

L Ridder, and F Briganti, and M G Boersma, and S Boeren, and E H Vis, and A Scozzafava, and C Veeger, and I M Rietjens
December 2005, Biochemical and biophysical research communications,
L Ridder, and F Briganti, and M G Boersma, and S Boeren, and E H Vis, and A Scozzafava, and C Veeger, and I M Rietjens
June 2004, Journal of biochemistry,
L Ridder, and F Briganti, and M G Boersma, and S Boeren, and E H Vis, and A Scozzafava, and C Veeger, and I M Rietjens
February 1994, Journal of molecular biology,
L Ridder, and F Briganti, and M G Boersma, and S Boeren, and E H Vis, and A Scozzafava, and C Veeger, and I M Rietjens
December 1988, Archives of biochemistry and biophysics,
L Ridder, and F Briganti, and M G Boersma, and S Boeren, and E H Vis, and A Scozzafava, and C Veeger, and I M Rietjens
October 1990, Wei sheng wu xue bao = Acta microbiologica Sinica,
L Ridder, and F Briganti, and M G Boersma, and S Boeren, and E H Vis, and A Scozzafava, and C Veeger, and I M Rietjens
June 2010, Journal of structural biology,
L Ridder, and F Briganti, and M G Boersma, and S Boeren, and E H Vis, and A Scozzafava, and C Veeger, and I M Rietjens
July 1996, Biochemistry and molecular biology international,
L Ridder, and F Briganti, and M G Boersma, and S Boeren, and E H Vis, and A Scozzafava, and C Veeger, and I M Rietjens
September 2023, AMB Express,
L Ridder, and F Briganti, and M G Boersma, and S Boeren, and E H Vis, and A Scozzafava, and C Veeger, and I M Rietjens
November 1982, The Journal of biological chemistry,
L Ridder, and F Briganti, and M G Boersma, and S Boeren, and E H Vis, and A Scozzafava, and C Veeger, and I M Rietjens
November 2003, International journal of biological macromolecules,
Copied contents to your clipboard!