Orientation of structural segments in globular proteins. 1976

D B Wetlaufer, and G D Rose, and L Taaffe

Twelve globular proteins have been examined to test whether structural segments are oriented at random. Structural segments are defined as the primary sequence of linear chain neighbors bounded by consecutive peptide chain turns. It is shown that, with this definition, a structural segment can be well approximated by a straight-line segment. Each protein in the test set was exhaustively partitioned into its constituent structural segments, and a method is presented for comparing pairwise intersegment orientations. Within a protein, it is found that three-dimensionally close-segments exhibit a pronounced tendency toward parallel orientation while distant segments are randomly oriented. Finally, some conclusions are presented relating to the general problem of segment packing in globular proteins.

UI MeSH Term Description Entries
D009113 Muramidase A basic enzyme that is present in saliva, tears, egg white, and many animal fluids. It functions as an antibacterial agent. The enzyme catalyzes the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrin. EC 3.2.1.17. Lysozyme,Leftose,N-Acetylmuramide Glycanhydrolase,Glycanhydrolase, N-Acetylmuramide,N Acetylmuramide Glycanhydrolase
D011487 Protein Conformation The characteristic 3-dimensional shape of a protein, including the secondary, supersecondary (motifs), tertiary (domains) and quaternary structure of the peptide chain. PROTEIN STRUCTURE, QUATERNARY describes the conformation assumed by multimeric proteins (aggregates of more than one polypeptide chain). Conformation, Protein,Conformations, Protein,Protein Conformations
D005916 Globulins A group of proteins that are salt-soluble and form a large fraction of BLOOD PROTEINS. There are three types of globulins, ALPHA-GLOBULINS, BETA-GLOBULINS, and GAMMA-GLOBULINS, which are distinguished from one another by their degree of electrophoretic mobility. Globulin

Related Publications

D B Wetlaufer, and G D Rose, and L Taaffe
February 1983, International journal of peptide and protein research,
D B Wetlaufer, and G D Rose, and L Taaffe
June 1976, Nature,
D B Wetlaufer, and G D Rose, and L Taaffe
January 1977, Angewandte Chemie (International ed. in English),
D B Wetlaufer, and G D Rose, and L Taaffe
November 1994, Structure (London, England : 1993),
D B Wetlaufer, and G D Rose, and L Taaffe
May 1977, Journal of theoretical biology,
D B Wetlaufer, and G D Rose, and L Taaffe
December 1994, Computer applications in the biosciences : CABIOS,
D B Wetlaufer, and G D Rose, and L Taaffe
January 1995, Proceedings of the National Academy of Sciences of the United States of America,
D B Wetlaufer, and G D Rose, and L Taaffe
May 1974, Journal of molecular biology,
D B Wetlaufer, and G D Rose, and L Taaffe
May 2005, Protein science : a publication of the Protein Society,
D B Wetlaufer, and G D Rose, and L Taaffe
June 1993, Protein science : a publication of the Protein Society,
Copied contents to your clipboard!