NMR conformational analysis of antide, a potent antagonist of the gonadotropin releasing hormone. 2002

Giuseppe Digilio, and Chiara Bracco, and Luca Barbero, and Daniela Chicco, and Maria D Del Curto, and Pierandrea Esposito, and Silvio Traversa, and Silvio Aime
Integrated Laboratory of Advanced Methodologies, Bioindustry Park del Canavese (Bi.P.Ca.), Via Ribes 5, Colleretto Giacosa (TO), I-10010 Italy. chemlima@bioindustrypark.it

Antide is a decapeptide [(N-Ac-D-Nal(1)-D-Cpa(2)-D-Pal(3)-Ser(4)-Lys(Nic)(5)-D-Lys(Nic)(6)-Leu(7)-Ilys(8)-Pro(9)-D-Ala(10)-NH(2)] that acts in vivo as an antagonist of GnRH (gonadotropin-releasing hormone). The conformational behavior of antide has been studied in water, TFE, DMF, and DMSO solutions by means of 2D-NMR spectroscopy and molecular dynamics calculations. Antide adopts in aqueous solution a delta-shaped backbone conformation, which is characterized by an irregular turn around residues D-Pal(3)-Ser(4) and by the close spatial proximity of the side chains belonging to D-Nal(1) and Ilys(8) (as many as 17 NOE peaks were detected between these side chains). The side-chain protons of Ilys(8) (especially the H(gamma) ones) present remarkably upfield shifted resonances, because of ring current effects induced by the naphthyl moiety. The upfield shifted resonances of the Ilys(8) H(gamma) hydrogen atoms are strictly characteristic of the water delta-shaped conformation and can be considered as structure markers. The observation of ring current shifted Ilys(8) H(gamma) resonances under different conditions (temperature, pH, solvent) indicates a remarkable stability of the water delta-shaped conformation. Such a conformation is at least partially disrupted in solvent mixtures containing high percentages of organic solvents. TFE can induce a well-defined conformation, which is characterized by an S-shaped backbone conformation. In DMF and DMSO solution, the molecule is basically endowed with a random coil conformation and high fluxionality. Antide fulfills the conformational requirements that are known to play a crucial role in receptor recognition, namely (i) the presence of a turn in the backbone and (ii) the all-trans nature of peptide bonds. In addition, the structural rigidity of antide likely adds a further contribution to the receptor binding affinity.

UI MeSH Term Description Entries
D007987 Gonadotropin-Releasing Hormone A decapeptide that stimulates the synthesis and secretion of both pituitary gonadotropins, LUTEINIZING HORMONE and FOLLICLE STIMULATING HORMONE. GnRH is produced by neurons in the septum PREOPTIC AREA of the HYPOTHALAMUS and released into the pituitary portal blood, leading to stimulation of GONADOTROPHS in the ANTERIOR PITUITARY GLAND. FSH-Releasing Hormone,GnRH,Gonadoliberin,Gonadorelin,LH-FSH Releasing Hormone,LHRH,Luliberin,Luteinizing Hormone-Releasing Hormone,Cystorelin,Dirigestran,Factrel,Gn-RH,Gonadorelin Acetate,Gonadorelin Hydrochloride,Kryptocur,LFRH,LH-RH,LH-Releasing Hormone,LHFSH Releasing Hormone,LHFSHRH,FSH Releasing Hormone,Gonadotropin Releasing Hormone,LH FSH Releasing Hormone,LH Releasing Hormone,Luteinizing Hormone Releasing Hormone,Releasing Hormone, LHFSH
D008958 Models, Molecular Models used experimentally or theoretically to study molecular shape, electronic properties, or interactions; includes analogous molecules, computer-generated graphics, and mechanical structures. Molecular Models,Model, Molecular,Molecular Model
D009842 Oligopeptides Peptides composed of between two and twelve amino acids. Oligopeptide
D011487 Protein Conformation The characteristic 3-dimensional shape of a protein, including the secondary, supersecondary (motifs), tertiary (domains) and quaternary structure of the peptide chain. PROTEIN STRUCTURE, QUATERNARY describes the conformation assumed by multimeric proteins (aggregates of more than one polypeptide chain). Conformation, Protein,Conformations, Protein,Protein Conformations
D004121 Dimethyl Sulfoxide A highly polar organic liquid, that is used widely as a chemical solvent. Because of its ability to penetrate biological membranes, it is used as a vehicle for topical application of pharmaceuticals. It is also used to protect tissue during CRYOPRESERVATION. Dimethyl sulfoxide shows a range of pharmacological activity including analgesia and anti-inflammation. DMSO,Dimethyl Sulphoxide,Dimethylsulfoxide,Dimethylsulphinyl,Dimethylsulphoxide,Dimexide,Rheumabene,Rimso,Rimso 100,Rimso-50,Sclerosol,Sulfinylbis(methane),Rimso 50,Rimso50,Sulfoxide, Dimethyl,Sulphoxide, Dimethyl
D004126 Dimethylformamide A formamide in which the amino hydrogens are replaced by methyl groups. N,N-Dimethylformamide,N,N Dimethylformamide
D006727 Hormone Antagonists Chemical substances which inhibit the function of the endocrine glands, the biosynthesis of their secreted hormones, or the action of hormones upon their specific sites. Antagonists, Hormone
D012996 Solutions The homogeneous mixtures formed by the mixing of a solid, liquid, or gaseous substance (solute) with a liquid (the solvent), from which the dissolved substances can be recovered by physical processes. (From Grant & Hackh's Chemical Dictionary, 5th ed) Solution
D013816 Thermodynamics A rigorously mathematical analysis of energy relationships (heat, work, temperature, and equilibrium). It describes systems whose states are determined by thermal parameters, such as temperature, in addition to mechanical and electromagnetic parameters. (From Hawley's Condensed Chemical Dictionary, 12th ed) Thermodynamic
D014270 Trifluoroethanol A non-aqueous co-solvent that serves as tool to study protein folding. It is also used in various pharmaceutical, chemical and engineering applications. Trifluoroethyl Alcohol,2,2,2-Trifluoroethanol,Alcohol, Trifluoroethyl

Related Publications

Giuseppe Digilio, and Chiara Bracco, and Luca Barbero, and Daniela Chicco, and Maria D Del Curto, and Pierandrea Esposito, and Silvio Traversa, and Silvio Aime
March 2005, Biology of reproduction,
Giuseppe Digilio, and Chiara Bracco, and Luca Barbero, and Daniela Chicco, and Maria D Del Curto, and Pierandrea Esposito, and Silvio Traversa, and Silvio Aime
October 1993, Fertility and sterility,
Giuseppe Digilio, and Chiara Bracco, and Luca Barbero, and Daniela Chicco, and Maria D Del Curto, and Pierandrea Esposito, and Silvio Traversa, and Silvio Aime
October 1993, Journal of medicinal chemistry,
Giuseppe Digilio, and Chiara Bracco, and Luca Barbero, and Daniela Chicco, and Maria D Del Curto, and Pierandrea Esposito, and Silvio Traversa, and Silvio Aime
April 1991, Endocrinology,
Giuseppe Digilio, and Chiara Bracco, and Luca Barbero, and Daniela Chicco, and Maria D Del Curto, and Pierandrea Esposito, and Silvio Traversa, and Silvio Aime
July 1994, Endocrinology,
Giuseppe Digilio, and Chiara Bracco, and Luca Barbero, and Daniela Chicco, and Maria D Del Curto, and Pierandrea Esposito, and Silvio Traversa, and Silvio Aime
March 2001, Journal of medicinal chemistry,
Giuseppe Digilio, and Chiara Bracco, and Luca Barbero, and Daniela Chicco, and Maria D Del Curto, and Pierandrea Esposito, and Silvio Traversa, and Silvio Aime
August 1990, Contraception,
Giuseppe Digilio, and Chiara Bracco, and Luca Barbero, and Daniela Chicco, and Maria D Del Curto, and Pierandrea Esposito, and Silvio Traversa, and Silvio Aime
October 1980, Science (New York, N.Y.),
Giuseppe Digilio, and Chiara Bracco, and Luca Barbero, and Daniela Chicco, and Maria D Del Curto, and Pierandrea Esposito, and Silvio Traversa, and Silvio Aime
April 1991, Endocrinology,
Giuseppe Digilio, and Chiara Bracco, and Luca Barbero, and Daniela Chicco, and Maria D Del Curto, and Pierandrea Esposito, and Silvio Traversa, and Silvio Aime
May 1987, Biochemistry,
Copied contents to your clipboard!