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A FORTRAN program PRSTRC has been developed for protein secondary structure prediction, which is a modified Chou and Fasman (1978) analysis. This implementation carries out a running average of amino acid structure occurrence frequencies, utilizes a simple set of nucleation conditions, and allows user control over nucleation threshold and cutoff parameters. The algorithm includes prediction of the newly defined secondary structure elements: omega loops (1986). It also generates a charge distribution and hydropathy profile. Output includes a simple graphic display for a printer, or a CRT using color addition. Correct structures are predicted for T. dyscritum hemerythrin and the variable domain of mouse immunoglobin k-chain.
W W Ralph, and
T Webster, and
T F Smith
December 2006,
BMC bioinformatics,
W W Ralph, and
T Webster, and
T F Smith
May 1998,
Protein engineering,
W W Ralph, and
T Webster, and
T F Smith
November 1983,
International journal of peptide and protein research,
W W Ralph, and
T Webster, and
T F Smith
January 2005,
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference,
W W Ralph, and
T Webster, and
T F Smith
July 1980,
Biochemical and biophysical research communications,
W W Ralph, and
T Webster, and
T F Smith
September 1978,
FEBS letters,
W W Ralph, and
T Webster, and
T F Smith
May 1983,
Journal of theoretical biology,
W W Ralph, and
T Webster, and
T F Smith
June 1987,
Analytical biochemistry,
W W Ralph, and
T Webster, and
T F Smith
January 1995,
Bio Systems,
W W Ralph, and
T Webster, and
T F Smith
October 1983,
Biochimica et biophysica acta,
