Blind color deconvolution, normalization, and classification of histological images using general super Gaussian priors and Bayesian inference. 2021

Fernando Pérez-Bueno, and Miguel Vega, and María A Sales, and José Aneiros-Fernández, and Valery Naranjo, and Rafael Molina, and Aggelos K Katsaggelos
Dpto. Ciencias de la Computación e Inteligencia Artificial, Universidad de Granada, Spain. Electronic address: fpb@ugr.es.

OBJECTIVE Color variations in digital histopathology severely impact the performance of computer-aided diagnosis systems. They are due to differences in the staining process and acquisition system, among other reasons. Blind color deconvolution techniques separate multi-stained images into single stained bands which, once normalized, can be used to eliminate these negative color variations and improve the performance of machine learning tasks. METHODS In this work, we decompose the observed RGB image in its hematoxylin and eosin components. We apply Bayesian modeling and inference based on the use of Super Gaussian sparse priors for each stain together with prior closeness to a given reference color-vector matrix. The hematoxylin and eosin components are then used for image normalization and classification of histological images. The proposed framework is tested on stain separation, image normalization, and cancer classification problems. The results are measured using the peak signal to noise ratio, normalized median intensity and the area under ROC curve on five different databases. RESULTS The obtained results show the superiority of our approach to current state-of-the-art blind color deconvolution techniques. In particular, the fidelity to the tissue improves 1,27 dB in mean PSNR. The normalized median intensity shows a good normalization quality of the proposed approach on the tested datasets. Finally, in cancer classification experiments the area under the ROC curve improves from 0.9491 to 0.9656 and from 0.9279 to 0.9541 on Camelyon-16 and Camelyon-17, respectively, when the original and processed images are used. Furthermore, these figures of merits are better than those obtained by the methods compared with. CONCLUSIONS The proposed framework for blind color deconvolution, normalization and classification of images guarantees fidelity to the tissue structure and can be used both for normalization and classification. In addition, color deconvolution enables the use of the optical density space for classification, which improves the classification performance.

UI MeSH Term Description Entries
D007091 Image Processing, Computer-Assisted A technique of inputting two-dimensional or three-dimensional images into a computer and then enhancing or analyzing the imagery into a form that is more useful to the human observer. Biomedical Image Processing,Computer-Assisted Image Processing,Digital Image Processing,Image Analysis, Computer-Assisted,Image Reconstruction,Medical Image Processing,Analysis, Computer-Assisted Image,Computer-Assisted Image Analysis,Computer Assisted Image Analysis,Computer Assisted Image Processing,Computer-Assisted Image Analyses,Image Analyses, Computer-Assisted,Image Analysis, Computer Assisted,Image Processing, Biomedical,Image Processing, Computer Assisted,Image Processing, Digital,Image Processing, Medical,Image Processings, Medical,Image Reconstructions,Medical Image Processings,Processing, Biomedical Image,Processing, Digital Image,Processing, Medical Image,Processings, Digital Image,Processings, Medical Image,Reconstruction, Image,Reconstructions, Image
D003116 Color The visually perceived property of objects created by absorption or reflection of specific wavelengths of light. Colors
D000465 Algorithms A procedure consisting of a sequence of algebraic formulas and/or logical steps to calculate or determine a given task. Algorithm
D001499 Bayes Theorem A theorem in probability theory named for Thomas Bayes (1702-1761). In epidemiology, it is used to obtain the probability of disease in a group of people with some characteristic on the basis of the overall rate of that disease and of the likelihood of that characteristic in healthy and diseased individuals. The most familiar application is in clinical decision analysis where it is used for estimating the probability of a particular diagnosis given the appearance of some symptoms or test result. Bayesian Analysis,Bayesian Estimation,Bayesian Forecast,Bayesian Method,Bayesian Prediction,Analysis, Bayesian,Bayesian Approach,Approach, Bayesian,Approachs, Bayesian,Bayesian Approachs,Estimation, Bayesian,Forecast, Bayesian,Method, Bayesian,Prediction, Bayesian,Theorem, Bayes
D016011 Normal Distribution Continuous frequency distribution of infinite range. Its properties are as follows: 1, continuous, symmetrical distribution with both tails extending to infinity; 2, arithmetic mean, mode, and median identical; and 3, shape completely determined by the mean and standard deviation. Gaussian Distribution,Distribution, Gaussian,Distribution, Normal,Distributions, Normal,Normal Distributions

Related Publications

Fernando Pérez-Bueno, and Miguel Vega, and María A Sales, and José Aneiros-Fernández, and Valery Naranjo, and Rafael Molina, and Aggelos K Katsaggelos
January 2020, IEEE transactions on image processing : a publication of the IEEE Signal Processing Society,
Fernando Pérez-Bueno, and Miguel Vega, and María A Sales, and José Aneiros-Fernández, and Valery Naranjo, and Rafael Molina, and Aggelos K Katsaggelos
August 2016, IEEE transactions on image processing : a publication of the IEEE Signal Processing Society,
Fernando Pérez-Bueno, and Miguel Vega, and María A Sales, and José Aneiros-Fernández, and Valery Naranjo, and Rafael Molina, and Aggelos K Katsaggelos
January 2015, IEEE transactions on medical imaging,
Fernando Pérez-Bueno, and Miguel Vega, and María A Sales, and José Aneiros-Fernández, and Valery Naranjo, and Rafael Molina, and Aggelos K Katsaggelos
December 2011, IEEE transactions on neural networks,
Fernando Pérez-Bueno, and Miguel Vega, and María A Sales, and José Aneiros-Fernández, and Valery Naranjo, and Rafael Molina, and Aggelos K Katsaggelos
March 2019, Computer methods and programs in biomedicine,
Fernando Pérez-Bueno, and Miguel Vega, and María A Sales, and José Aneiros-Fernández, and Valery Naranjo, and Rafael Molina, and Aggelos K Katsaggelos
March 2021, Environmental research,
Fernando Pérez-Bueno, and Miguel Vega, and María A Sales, and José Aneiros-Fernández, and Valery Naranjo, and Rafael Molina, and Aggelos K Katsaggelos
November 2020, Cancers,
Fernando Pérez-Bueno, and Miguel Vega, and María A Sales, and José Aneiros-Fernández, and Valery Naranjo, and Rafael Molina, and Aggelos K Katsaggelos
June 2013, IEEE transactions on medical imaging,
Fernando Pérez-Bueno, and Miguel Vega, and María A Sales, and José Aneiros-Fernández, and Valery Naranjo, and Rafael Molina, and Aggelos K Katsaggelos
April 2009, IEEE transactions on image processing : a publication of the IEEE Signal Processing Society,
Fernando Pérez-Bueno, and Miguel Vega, and María A Sales, and José Aneiros-Fernández, and Valery Naranjo, and Rafael Molina, and Aggelos K Katsaggelos
October 2008, IEEE transactions on ultrasonics, ferroelectrics, and frequency control,
Copied contents to your clipboard!