Encounters of Saccharomyces cerevisiae RNA polymerase III with its transcription factors during RNA chain elongation. 1994

C Bardeleben, and G A Kassavetis, and E P Geiduschek
Department of Biology, University of California, San Diego, La Jolla 92093-0634.

The analysis of RNA chain elongation by Saccharomyces cerevisiae RNA polymerase (Pol) III in the accompanying paper has been extended by examining the encounter of highly purified RNA polymerase with purified individual transcription factors. Arrested ternary transcription complexes were formed with purified Pol III initiating precisely at the 3' overhanging ends of linear DNA. Transcription factors were then bound to DNA and their effects on individual steps of RNA chain elongation were analyzed. The outcome of the encounter between Pol III and TFIIIC was orientation-specific. For RNA synthesis in the sense direction, with Pol III approaching the obstructing protein from the direction of normal transcription, pure TFIIIC rapidly yielded the way to the advancing polymerase: only a single step of RNA chain elongation was slightly slowed by pure TFIIIC occupying its boxB binding site in the SUP4 tRNA(Tyr) gene. In a complete cell-free fraction, protein binding to this tRNA gene likewise generated a delay of only approximately 0.15 to 0.2 second in executing the same step. Transcription by pure Pol III in the sense direction also dissociated the TFIIIC-SUP4 gene complex. The encounter of Pol III elongating RNA chains in the anti-sense direction with the backside of TFIIIC yielded a different outcome. RNA chain elongation paused extensively six to nine base-pairs beyond the downstream edge of the DNA-binding site of TFIIIC, with a median delay of nine seconds, approximately 50 times longer than in the sense direction. At the height of its effect on RNA chain elongation, the TFIIIC-imposed barrier entrapped the great majority of RNA chains, but their elongation was eventually allowed to continue. In contrast, DNA-bound TFIIIB completely blocked RNA chain elongation in the anti-sense direction. The role of the internal promoter element in transcription by Pol III is discussed in the light of this analysis. The large bulk of TFIIIC, which binds with high affinity to boxB, and also to boxA, is particularly suited to occluding its transcription unit to other proteins. At the same time, TFIIIC makes way for transcription so rapidly that it places no limit on the level of gene activity.

UI MeSH Term Description Entries
D008969 Molecular Sequence Data Descriptions of specific amino acid, carbohydrate, or nucleotide sequences which have appeared in the published literature and/or are deposited in and maintained by databanks such as GENBANK, European Molecular Biology Laboratory (EMBL), National Biomedical Research Foundation (NBRF), or other sequence repositories. Sequence Data, Molecular,Molecular Sequencing Data,Data, Molecular Sequence,Data, Molecular Sequencing,Sequencing Data, Molecular
D004271 DNA, Fungal Deoxyribonucleic acid that makes up the genetic material of fungi. Fungal DNA
D001483 Base Sequence The sequence of PURINES and PYRIMIDINES in nucleic acids and polynucleotides. It is also called nucleotide sequence. DNA Sequence,Nucleotide Sequence,RNA Sequence,DNA Sequences,Base Sequences,Nucleotide Sequences,RNA Sequences,Sequence, Base,Sequence, DNA,Sequence, Nucleotide,Sequence, RNA,Sequences, Base,Sequences, DNA,Sequences, Nucleotide,Sequences, RNA
D012320 RNA Polymerase III A DNA-dependent RNA polymerase present in bacterial, plant, and animal cells. It functions in the nucleoplasmic structure where it transcribes DNA into RNA. It has specific requirements for cations and salt and has shown an intermediate sensitivity to alpha-amanitin in comparison to RNA polymerase I and II. DNA-Dependent RNA Polymerase III,RNA Polymerase C,DNA Dependent RNA Polymerase III,Polymerase C, RNA,Polymerase III, RNA
D012331 RNA, Fungal Ribonucleic acid in fungi having regulatory and catalytic roles as well as involvement in protein synthesis. Fungal RNA
D012365 RNA, Transfer, Tyr A transfer RNA which is specific for carrying tyrosine to sites on the ribosomes in preparation for protein synthesis. Transfer RNA, Tyr,Tyrosine-Specific tRNA,tRNATyr,tRNA(Tyr),RNA, Tyr Transfer,Tyr Transfer RNA,Tyrosine Specific tRNA,tRNA, Tyrosine-Specific
D012441 Saccharomyces cerevisiae A species of the genus SACCHAROMYCES, family Saccharomycetaceae, order Saccharomycetales, known as "baker's" or "brewer's" yeast. The dried form is used as a dietary supplement. Baker's Yeast,Brewer's Yeast,Candida robusta,S. cerevisiae,Saccharomyces capensis,Saccharomyces italicus,Saccharomyces oviformis,Saccharomyces uvarum var. melibiosus,Yeast, Baker's,Yeast, Brewer's,Baker Yeast,S cerevisiae,Baker's Yeasts,Yeast, Baker
D014157 Transcription Factors Endogenous substances, usually proteins, which are effective in the initiation, stimulation, or termination of the genetic transcription process. Transcription Factor,Factor, Transcription,Factors, Transcription
D014158 Transcription, Genetic The biosynthesis of RNA carried out on a template of DNA. The biosynthesis of DNA from an RNA template is called REVERSE TRANSCRIPTION. Genetic Transcription
D016372 RNA, Antisense RNA molecules which hybridize to complementary sequences in either RNA or DNA altering the function of the latter. Endogenous antisense RNAs function as regulators of gene expression by a variety of mechanisms. Synthetic antisense RNAs are used to effect the functioning of specific genes for investigative or therapeutic purposes. Antisense RNA,Anti-Sense RNA,Anti Sense RNA,RNA, Anti-Sense

Related Publications

C Bardeleben, and G A Kassavetis, and E P Geiduschek
January 1994, Journal of molecular biology,
C Bardeleben, and G A Kassavetis, and E P Geiduschek
January 1996, Methods in enzymology,
C Bardeleben, and G A Kassavetis, and E P Geiduschek
January 1994, Genetic engineering,
C Bardeleben, and G A Kassavetis, and E P Geiduschek
February 2024, Genes,
C Bardeleben, and G A Kassavetis, and E P Geiduschek
October 2002, Molecular and cellular biology,
C Bardeleben, and G A Kassavetis, and E P Geiduschek
January 1996, Methods in enzymology,
C Bardeleben, and G A Kassavetis, and E P Geiduschek
November 1991, Trends in biochemical sciences,
C Bardeleben, and G A Kassavetis, and E P Geiduschek
January 2015, Methods in molecular biology (Clifton, N.J.),
C Bardeleben, and G A Kassavetis, and E P Geiduschek
September 1999, The Journal of biological chemistry,
C Bardeleben, and G A Kassavetis, and E P Geiduschek
November 2002, Molecular and cellular biology,
Copied contents to your clipboard!