Energetics of the quinone electron acceptor complex in Rubrivivax gelatinosus. 1995

I Agalidis, and P Sebban
Centre de Génétique Moléculaire, Photosynthèse, Bât. 24, CNRS, Gif sur Yvette, France.

The pH and temperature dependences of the free energy stabilization of the Q-A and Q-B semiquinone anions (QA and QB are respectively the primary and secondary quinone electron acceptors) were studied in antenna-reaction centre complex from Rubrivivax (R.) gelatinosus. This was achieved by measuring the rate constants of the P+Q-A (kAP) and P+Q-B (kBP) (P is the primary electron donor) charge recombination processes by flash-induced absorption spectroscopy. Despite the high primary sequence analogies of the QA and QB protein pockets between R. gelatinosus and the much more studied species as Rps. viridis, Rb. sphaeroides and Rb. capsulatus, the energetic behaviour of the quinone complex of R. gelatinosus appears to be somewhat different: (i) above pH 10, kAP decreases, whereas it increases in Rps. viridis; this suggests the presence of a protonatable group that stabilizes I- (I is a bacteriopheophytin electron acceptor) rather than Q-A; (ii) the pH dependence of kBP is unusually flat in the range 4-7.5, possibly reflecting that a substantial part of the P+Q-B charge recombination proceeds via the direct route through the protein by an electron tunnelling mechanism, at variance to what is observed in the three species mentioned above; (iii) the very substantial increase of kBP observed above pH 7.5 is reasonably well described by the presence of two apparent protonatable groups: pK1QB = 9.4, pK1Q-B = 11 and pK2QB = 8.5, pK2Q-B = 9.4. The latter group was not reported in Rps. viridis, Rb. sphaeroides or Rb. capsulatus. We conclude that the apparent pK values measured here in R. gelatinosus may reflect the contribution as a whole of several and/or distant groups rather than of well-defined residues.

UI MeSH Term Description Entries
D007700 Kinetics The rate dynamics in chemical or physical systems.
D008969 Molecular Sequence Data Descriptions of specific amino acid, carbohydrate, or nucleotide sequences which have appeared in the published literature and/or are deposited in and maintained by databanks such as GENBANK, European Molecular Biology Laboratory (EMBL), National Biomedical Research Foundation (NBRF), or other sequence repositories. Sequence Data, Molecular,Molecular Sequencing Data,Data, Molecular Sequence,Data, Molecular Sequencing,Sequencing Data, Molecular
D006863 Hydrogen-Ion Concentration The normality of a solution with respect to HYDROGEN ions; H+. It is related to acidity measurements in most cases by pH pH,Concentration, Hydrogen-Ion,Concentrations, Hydrogen-Ion,Hydrogen Ion Concentration,Hydrogen-Ion Concentrations
D000595 Amino Acid Sequence The order of amino acids as they occur in a polypeptide chain. This is referred to as the primary structure of proteins. It is of fundamental importance in determining PROTEIN CONFORMATION. Protein Structure, Primary,Amino Acid Sequences,Sequence, Amino Acid,Sequences, Amino Acid,Primary Protein Structure,Primary Protein Structures,Protein Structures, Primary,Structure, Primary Protein,Structures, Primary Protein
D012241 Rhodopseudomonas A genus of gram-negative, rod-shaped, phototrophic bacteria found in aquatic environments. Internal photosynthetic membranes are present as lamellae underlying the cytoplasmic membrane.
D012242 Rhodobacter sphaeroides Spherical phototrophic bacteria found in mud and stagnant water exposed to light. Rhodopseudomonas sphaeroides,Rhodobacter spheroides,Rhodopseudomonas spheroides
D012244 Rhodospirillaceae A family of phototrophic bacteria, in the order Rhodospirillales, isolated from stagnant water and mud. Bacteria, Purple Nonsulfur,Purple Nonsulfur Bacteria
D013696 Temperature The property of objects that determines the direction of heat flow when they are placed in direct thermal contact. The temperature is the energy of microscopic motions (vibrational and translational) of the particles of atoms. Temperatures
D013816 Thermodynamics A rigorously mathematical analysis of energy relationships (heat, work, temperature, and equilibrium). It describes systems whose states are determined by thermal parameters, such as temperature, in addition to mechanical and electromagnetic parameters. (From Hawley's Condensed Chemical Dictionary, 12th ed) Thermodynamic
D016227 Benzoquinones Benzene rings which contain two ketone moieties in any position. They can be substituted in any position except at the ketone groups. 1,2-Benzoquinones,1,4-Benzoquinones,Benzodiones,2,5-Cyclohexadiene-1,4-Diones,o-Benzoquinones,p-Benzoquinones

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