Biomaterial Database

Effect of lipid molecular structure and gramicidin A on the core of lipid vesicle bilayers. A time-resolved fluorescence depolarization study. 1996

J M Muller, and G van Ginkel, and E E van Faassen

Department of Molecular Biophysics, Buijs Ballot Laboratory, Utrecht University, The Netherlands.

We have investigated the molecular orientational order and reorientational dynamics of the fluorescent probe 1,6-diphenyl-1,3,5-hexatriene (DPH) in the core of the membrane bilayer. Vesicles of lipids of varying unsaturation and headgroup (POPC, DOPC, DLPC, DLLPC, EGGPG, DOPG, DGDG, and SQDG) were studied using the time-resolved fluorescence anisotropy of DPH. Generally, values of the second order parameter <P2> for DPH are found to be very small. However, this should not be interpreted as DPH having low orientational order as witnessed by large values of the next relevant order parameter <P4>. This implies considerable transverse populations of DPH molecules within the bilayer. In phosphatidylcholines with an acyl chain of 18 carbon atoms, the value of <P2> for DPH decreases with increasing lipid unsaturation and even attains negative values. No effect of the lipid headgroup on the order and dynamics of DPH is detected. Furthermore, we study the peptide-lipid interaction of the hydrophobic antibiotic gramicidin A (gA) in DOPC vesicles using DPH. The nonchannel conformation has an ordering effect on DPH in the bilayer core, which the channel confirmation lacks. This can be understood in terms of the geometrical shape of the gA dimer, as shown previously with the probes TMA-DPH and DPHPC [Muller, J. M., et al. (1995) Biochemistry 34, 3092]. We find that for DPH data the conventional Brownian rotational diffusion (BRD) model and the compound motion model (CMM) give equivalent fits. In this respect, DPH differs from TMA-DPH and DPHPC, for which probes only the CMM allowed a consistent interpretation of the molecular orientation.

UI	MeSH Term	Description	Entries
D008051	Lipid Bilayers	Layers of lipid molecules which are two molecules thick. Bilayer systems are frequently studied as models of biological membranes.	Bilayers, Lipid,Bilayer, Lipid,Lipid Bilayer
D008055	Lipids	A generic term for fats and lipoids, the alcohol-ether-soluble constituents of protoplasm, which are insoluble in water. They comprise the fats, fatty oils, essential oils, waxes, phospholipids, glycolipids, sulfolipids, aminolipids, chromolipids (lipochromes), and fatty acids. (Grant & Hackh's Chemical Dictionary, 5th ed)	Lipid
D008956	Models, Chemical	Theoretical representations that simulate the behavior or activity of chemical processes or phenomena; includes the use of mathematical equations, computers, and other electronic equipment.	Chemical Models,Chemical Model,Model, Chemical
D009038	Motion	Physical motion, i.e., a change in position of a body or subject as a result of an external force. It is distinguished from MOVEMENT, a process resulting from biological activity.	Motions
D010713	Phosphatidylcholines	Derivatives of PHOSPHATIDIC ACIDS in which the phosphoric acid is bound in ester linkage to a CHOLINE moiety.	Choline Phosphoglycerides,Choline Glycerophospholipids,Phosphatidyl Choline,Phosphatidyl Cholines,Phosphatidylcholine,Choline, Phosphatidyl,Cholines, Phosphatidyl,Glycerophospholipids, Choline,Phosphoglycerides, Choline
D010715	Phosphatidylglycerols	A nitrogen-free class of lipids present in animal and particularly plant tissues and composed of one mole of glycerol and 1 or 2 moles of phosphatidic acid. Members of this group differ from one another in the nature of the fatty acids released on hydrolysis.	Glycerol Phosphoglycerides,Monophosphatidylglycerols,Phosphatidylglycerol,Phosphatidyl Glycerol,Glycerol, Phosphatidyl,Phosphoglycerides, Glycerol
D004058	Diffusion	The tendency of a gas or solute to pass from a point of higher pressure or concentration to a point of lower pressure or concentration and to distribute itself throughout the available space. Diffusion, especially FACILITATED DIFFUSION, is a major mechanism of BIOLOGICAL TRANSPORT.	Diffusions
D005454	Fluorescence Polarization	Measurement of the polarization of fluorescent light from solutions or microscopic specimens. It is used to provide information concerning molecular size, shape, and conformation, molecular anisotropy, electronic energy transfer, molecular interaction, including dye and coenzyme binding, and the antigen-antibody reaction.	Anisotropy, Fluorescence,Fluorescence Anisotropy,Polarization, Fluorescence,Anisotropies, Fluorescence,Fluorescence Anisotropies,Fluorescence Polarizations,Polarizations, Fluorescence
D006096	Gramicidin	A group of peptide antibiotics from BACILLUS brevis. Gramicidin C or S is a cyclic, ten-amino acid polypeptide and gramicidins A, B, D are linear. Gramicidin is one of the two principal components of TYROTHRICIN.	Gramicidin A,Gramicidin A(1),Gramicidin B,Gramicidin C,Gramicidin D,Gramicidin Dubos,Gramicidin J,Gramicidin K,Gramicidin NF,Gramicidin P,Gramicidin S,Gramicidins,Gramoderm,Linear Gramicidin,Gramicidin, Linear
D013816	Thermodynamics	A rigorously mathematical analysis of energy relationships (heat, work, temperature, and equilibrium). It describes systems whose states are determined by thermal parameters, such as temperature, in addition to mechanical and electromagnetic parameters. (From Hawley's Condensed Chemical Dictionary, 12th ed)	Thermodynamic