Conformations of cyclo(L-alanyl-L-alanyl-epsilon-aminocaproyl) and of cyclo(L-alanyl-D-alanyl-epsilon-aminocaproyl); cyclized dipeptide models for specific types of beta-bends. 1982

J Bandekar, and D J Evans, and S Krimm, and S J Leach, and S Lee, and J R McQuie, and E Minasian, and G Némethy, and M S Pottle, and H A Scheraga, and E R Stimson, and R W Woody

Conformational energy calculations indicate that the peptide backbones of the low-energy conformations of the cyclized dipeptide derivatives cyclo (L-alanyl-L-alanyl-epsilon-aminocaproyl) and cyclo (L-alanyl-D-alanyl-epsilon-aminocaproyl) are constrained to form beta-bends of types I + III and II, respectively. Thus, the two compounds can serve as models for the spectroscopic properties of beta-bends of these types. The coupling constants obtained from 1H n.m.r. spectra in DMSO-d6 are consistent with the dihedral angeles of the computed lowest-energy conformations. Differences in 13C chemical shifts between the two compounds can be correlated with differences in shielding by C=O groups in bends of various types. 1H and 13C chemical shifts suggest association of cyclo (L-Ala-L-Ala-Aca) but not of cyclo (L-Ala-D-Ala-Aca) in dimethylsulfoxide. The different tendencies to associate can be explained in terms of the difference in conformation. The circular dichroism spectra of the two compounds are quite different. In methanol, trifluoroethanol and water, the L-Ala-L-Ala derivative has a positive extremum near 190 nm and two negative extrema near 206 and 220 nm, whereas the L-Ala-D-Ala derivative has a positive extremum at about 203 nm and negative extrema at about 187 and 229 nm. The spectra can be used to estimate the contribution of various bend types in a related series of compounds. A normal mode analysis of the vibrations of the computed low-energy conformations was compared with solid state infrared and Raman spectra, in order to determine the predominant conformations. The bend types determined by this comparison fully agree with the predictions of the theoretical computations for both derivatives.

UI MeSH Term Description Entries
D009682 Magnetic Resonance Spectroscopy Spectroscopic method of measuring the magnetic moment of elementary particles such as atomic nuclei, protons or electrons. It is employed in clinical applications such as NMR Tomography (MAGNETIC RESONANCE IMAGING). In Vivo NMR Spectroscopy,MR Spectroscopy,Magnetic Resonance,NMR Spectroscopy,NMR Spectroscopy, In Vivo,Nuclear Magnetic Resonance,Spectroscopy, Magnetic Resonance,Spectroscopy, NMR,Spectroscopy, Nuclear Magnetic Resonance,Magnetic Resonance Spectroscopies,Magnetic Resonance, Nuclear,NMR Spectroscopies,Resonance Spectroscopy, Magnetic,Resonance, Magnetic,Resonance, Nuclear Magnetic,Spectroscopies, NMR,Spectroscopy, MR
D010456 Peptides, Cyclic Peptides whose amino acid residues are linked together forming a circular chain. Some of them are ANTI-INFECTIVE AGENTS; some are biosynthesized non-ribosomally (PEPTIDE BIOSYNTHESIS, NON-RIBOSOMAL). Circular Peptide,Cyclic Peptide,Cyclic Peptides,Cyclopeptide,Orbitide,Circular Peptides,Cyclopeptides,Orbitides,Peptide, Circular,Peptide, Cyclic,Peptides, Circular
D011487 Protein Conformation The characteristic 3-dimensional shape of a protein, including the secondary, supersecondary (motifs), tertiary (domains) and quaternary structure of the peptide chain. PROTEIN STRUCTURE, QUATERNARY describes the conformation assumed by multimeric proteins (aggregates of more than one polypeptide chain). Conformation, Protein,Conformations, Protein,Protein Conformations
D002627 Chemistry, Physical The study of CHEMICAL PHENOMENA and processes in terms of the underlying PHYSICAL PHENOMENA and processes. Physical Chemistry,Chemistries, Physical,Physical Chemistries
D002942 Circular Dichroism A change from planar to elliptic polarization when an initially plane-polarized light wave traverses an optically active medium. (McGraw-Hill Dictionary of Scientific and Technical Terms, 4th ed) Circular Dichroism, Vibrational,Dichroism, Circular,Vibrational Circular Dichroism
D013056 Spectrophotometry, Ultraviolet Determination of the spectra of ultraviolet absorption by specific molecules in gases or liquids, for example Cl2, SO2, NO2, CS2, ozone, mercury vapor, and various unsaturated compounds. (McGraw-Hill Dictionary of Scientific and Technical Terms, 4th ed) Ultraviolet Spectrophotometry
D013329 Structure-Activity Relationship The relationship between the chemical structure of a compound and its biological or pharmacological activity. Compounds are often classed together because they have structural characteristics in common including shape, size, stereochemical arrangement, and distribution of functional groups. Relationship, Structure-Activity,Relationships, Structure-Activity,Structure Activity Relationship,Structure-Activity Relationships
D055598 Chemical Phenomena The composition, structure, conformation, and properties of atoms and molecules, and their reaction and interaction processes. Chemical Concepts,Chemical Processes,Physical Chemistry Concepts,Physical Chemistry Processes,Physicochemical Concepts,Physicochemical Phenomena,Physicochemical Processes,Chemical Phenomenon,Chemical Process,Physical Chemistry Phenomena,Physical Chemistry Process,Physicochemical Phenomenon,Physicochemical Process,Chemical Concept,Chemistry Process, Physical,Chemistry Processes, Physical,Concept, Chemical,Concept, Physical Chemistry,Concept, Physicochemical,Concepts, Chemical,Concepts, Physical Chemistry,Concepts, Physicochemical,Phenomena, Chemical,Phenomena, Physical Chemistry,Phenomena, Physicochemical,Phenomenon, Chemical,Phenomenon, Physicochemical,Physical Chemistry Concept,Physicochemical Concept,Process, Chemical,Process, Physical Chemistry,Process, Physicochemical,Processes, Chemical,Processes, Physical Chemistry,Processes, Physicochemical

Related Publications

J Bandekar, and D J Evans, and S Krimm, and S J Leach, and S Lee, and J R McQuie, and E Minasian, and G Némethy, and M S Pottle, and H A Scheraga, and E R Stimson, and R W Woody
November 1986, Biophysical chemistry,
J Bandekar, and D J Evans, and S Krimm, and S J Leach, and S Lee, and J R McQuie, and E Minasian, and G Némethy, and M S Pottle, and H A Scheraga, and E R Stimson, and R W Woody
January 1985, International journal of peptide and protein research,
J Bandekar, and D J Evans, and S Krimm, and S J Leach, and S Lee, and J R McQuie, and E Minasian, and G Némethy, and M S Pottle, and H A Scheraga, and E R Stimson, and R W Woody
November 1976, Biopolymers,
J Bandekar, and D J Evans, and S Krimm, and S J Leach, and S Lee, and J R McQuie, and E Minasian, and G Némethy, and M S Pottle, and H A Scheraga, and E R Stimson, and R W Woody
June 1979, Proceedings of the National Academy of Sciences of the United States of America,
J Bandekar, and D J Evans, and S Krimm, and S J Leach, and S Lee, and J R McQuie, and E Minasian, and G Némethy, and M S Pottle, and H A Scheraga, and E R Stimson, and R W Woody
January 1995, Acta poloniae pharmaceutica,
J Bandekar, and D J Evans, and S Krimm, and S J Leach, and S Lee, and J R McQuie, and E Minasian, and G Némethy, and M S Pottle, and H A Scheraga, and E R Stimson, and R W Woody
January 1996, Acta poloniae pharmaceutica,
J Bandekar, and D J Evans, and S Krimm, and S J Leach, and S Lee, and J R McQuie, and E Minasian, and G Némethy, and M S Pottle, and H A Scheraga, and E R Stimson, and R W Woody
August 1972, FEBS letters,
J Bandekar, and D J Evans, and S Krimm, and S J Leach, and S Lee, and J R McQuie, and E Minasian, and G Némethy, and M S Pottle, and H A Scheraga, and E R Stimson, and R W Woody
April 1988, International journal of peptide and protein research,
J Bandekar, and D J Evans, and S Krimm, and S J Leach, and S Lee, and J R McQuie, and E Minasian, and G Némethy, and M S Pottle, and H A Scheraga, and E R Stimson, and R W Woody
June 1991, Acta crystallographica. Section C, Crystal structure communications,
J Bandekar, and D J Evans, and S Krimm, and S J Leach, and S Lee, and J R McQuie, and E Minasian, and G Némethy, and M S Pottle, and H A Scheraga, and E R Stimson, and R W Woody
November 1979, Cancer research,
Copied contents to your clipboard!