Translational coupling by modulation of feedback repression in the IF3 operon of Escherichia coli. 1997

C Chiaruttini, and M Milet, and M Springer
Unité Propre de Recherche 9073 du Centre National de la Recherche Scientifique, Institut de Biologie Physico-Chimique, 13 rue Pierre et Marie Curie, 75005 Paris, France.

A pseudoknot formed by a long-range interaction in the mRNA of the initiation factor 3 (IF3) operon is involved in the translational repression of the gene encoding ribosomal protein L35 by another ribosomal protein, L20. The nucleotides forming the 5' strand of the key stem of the pseudoknot are located within the gene for IF3, whereas those forming the 3' strand are located 280 nt downstream, immediately upstream of the Shine-Dalgarno sequence of the gene for L35. Here we show that premature termination of IF3 translation at a nonsense codon introduced upstream of the pseudoknot results in a substantial enhancement of L20-mediated repression of L35 expression. Conversely, an increase of IF3 translation decreases repression. These results, in addition to an analysis of the effect of mutations in sequences forming the pseudoknot, indicate that IF3 translation decreases L20-mediated repression of L35 expression. We propose that ribosomes translating IF3 disrupt the pseudoknot and thereby attenuate repression. The result is a novel type of translational coupling, where unfolding of the pseudoknot by ribosomes translating IF3 does not increase expression of L35 directly, but alleviates its repression by L20.

UI MeSH Term Description Entries
D009876 Operon In bacteria, a group of metabolically related genes, with a common promoter, whose transcription into a single polycistronic MESSENGER RNA is under the control of an OPERATOR REGION. Operons
D010448 Peptide Initiation Factors Protein factors uniquely required during the initiation phase of protein synthesis in GENETIC TRANSLATION. Initiation Factors,Initiation Factor,Factors, Peptide Initiation,Initiation Factors, Peptide
D004926 Escherichia coli A species of gram-negative, facultatively anaerobic, rod-shaped bacteria (GRAM-NEGATIVE FACULTATIVELY ANAEROBIC RODS) commonly found in the lower part of the intestine of warm-blooded animals. It is usually nonpathogenic, but some strains are known to produce DIARRHEA and pyogenic infections. Pathogenic strains (virotypes) are classified by their specific pathogenic mechanisms such as toxins (ENTEROTOXIGENIC ESCHERICHIA COLI), etc. Alkalescens-Dispar Group,Bacillus coli,Bacterium coli,Bacterium coli commune,Diffusely Adherent Escherichia coli,E coli,EAggEC,Enteroaggregative Escherichia coli,Enterococcus coli,Diffusely Adherent E. coli,Enteroaggregative E. coli,Enteroinvasive E. coli,Enteroinvasive Escherichia coli
D005246 Feedback A mechanism of communication within a system in that the input signal generates an output response which returns to influence the continued activity or productivity of that system. Feedbacks
D001426 Bacterial Proteins Proteins found in any species of bacterium. Bacterial Gene Products,Bacterial Gene Proteins,Gene Products, Bacterial,Bacterial Gene Product,Bacterial Gene Protein,Bacterial Protein,Gene Product, Bacterial,Gene Protein, Bacterial,Gene Proteins, Bacterial,Protein, Bacterial,Proteins, Bacterial
D014176 Protein Biosynthesis The biosynthesis of PEPTIDES and PROTEINS on RIBOSOMES, directed by MESSENGER RNA, via TRANSFER RNA that is charged with standard proteinogenic AMINO ACIDS. Genetic Translation,Peptide Biosynthesis, Ribosomal,Protein Translation,Translation, Genetic,Protein Biosynthesis, Ribosomal,Protein Synthesis, Ribosomal,Ribosomal Peptide Biosynthesis,mRNA Translation,Biosynthesis, Protein,Biosynthesis, Ribosomal Peptide,Biosynthesis, Ribosomal Protein,Genetic Translations,Ribosomal Protein Biosynthesis,Ribosomal Protein Synthesis,Synthesis, Ribosomal Protein,Translation, Protein,Translation, mRNA,mRNA Translations
D039621 Eukaryotic Initiation Factor-3 A multisubunit eukaryotic initiation factor that contains at least 8 distinct polypeptides. It plays a role in recycling of ribosomal subunits to the site of transcription initiation by promoting the dissociation of non-translating ribosomal subunits. It also is involved in promoting the binding of a ternary complex of EUKARYOTIC INITIATION FACTOR-2; GTP; and INITIATOR TRNA to the 40S ribosomal subunit. EIF-3,Peptide Initiation Factor EIF-3,EIF3,EIF3 p110,EIF3 p42 Protein,EIF3-alpha,EIF3-beta,EIF3-epsilon,EIF3-gamma,EIF3-p48,EIF3-zeta,EIF3S3 Gene Product,EIF3S3 Protein,EIF3S4 Protein,Eukaryotic Initiation Factor-3 p110,Eukaryotic Initiation Factor-3, Subunit 1,Eukaryotic Initiation Factor-3, Subunit 2,Eukaryotic Initiation Factor-3, Subunit 3,Eukaryotic Initiation Factor-3, Subunit 4,Eukaryotic Initiation Factor-3, Subunit 5,Eukaryotic Initiation Factor-3, Subunit 6,Eukaryotic Initiation Factor-3, Subunit 7,Eukaryotic Initiation Factor-3, Subunit 8,Eukaryotic Initiation Factor-3, beta Subunit,Eukaryotic Initiation Factor-3, delta Subunit,Eukaryotic Initiation Factor-3, gamma Subunit,Eukaryotic Initiation Factor-3, zeta Subunit,Eukaryotic Peptide Initiation Factor 3, Subunit 5,Eukaryotic Peptide Initiation Factor-3,Eukaryotic Peptide Initiation Factor-3, Subunit 1,Eukaryotic Peptide Initiation Factor-3, Subunit 2,Eukaryotic Peptide Initiation Factor-3, Subunit 3,Eukaryotic Peptide Initiation Factor-3, Subunit 4,Eukaryotic Peptide Initiation Factor-3, alpha Subunit,Eukaryotic Translation Initiation Factor-3, Subunit 8,INT6 Protein,Int-6 Gene Product,Int-6 Protein,p42 EIF3 Protein,EIF3 Protein, p42,EIF3 alpha,EIF3 epsilon,EIF3 gamma,Eukaryotic Initiation Factor 3,Eukaryotic Initiation Factor 3 p110,Eukaryotic Initiation Factor 3, Subunit 1,Eukaryotic Initiation Factor 3, Subunit 2,Eukaryotic Initiation Factor 3, Subunit 3,Eukaryotic Initiation Factor 3, Subunit 4,Eukaryotic Initiation Factor 3, Subunit 5,Eukaryotic Initiation Factor 3, Subunit 6,Eukaryotic Initiation Factor 3, Subunit 7,Eukaryotic Initiation Factor 3, Subunit 8,Eukaryotic Initiation Factor 3, beta Subunit,Eukaryotic Initiation Factor 3, delta Subunit,Eukaryotic Initiation Factor 3, gamma Subunit,Eukaryotic Initiation Factor 3, zeta Subunit,Eukaryotic Peptide Initiation Factor 3,Eukaryotic Peptide Initiation Factor 3, Subunit 1,Eukaryotic Peptide Initiation Factor 3, Subunit 2,Eukaryotic Peptide Initiation Factor 3, Subunit 3,Eukaryotic Peptide Initiation Factor 3, Subunit 4,Eukaryotic Peptide Initiation Factor 3, alpha Subunit,Eukaryotic Translation Initiation Factor 3, Subunit 8,Gene Product, Int-6,Initiation Factor-3, Eukaryotic,Int 6 Gene Product,Int 6 Protein,Peptide Initiation Factor EIF 3

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